nuclear hormone receptor, snap_masked-scaffold58_size443543-processed-gene-3.1 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19") HSP 1 Score: 57.7658 bits (138), Expect = 7.600e-12 Identity = 25/63 (39.68%), Postives = 33/63 (52.38%), Query Frame = 0 Query: 14 GDRRHYGAISCEGCKGFFKRSIRKQLGYQ---CRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR 73 G +YG C C+ FF+RS++ Q C KDC + R CQ CR QKC++ GMR Sbjct: 115 GKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMR 177
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22") HSP 1 Score: 57.7658 bits (138), Expect = 8.215e-12 Identity = 24/64 (37.50%), Postives = 34/64 (53.12%), Query Frame = 0 Query: 14 GDRRHYGAISCEGCKGFFKRSIRKQLGYQ---CRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRS 74 G +YG C C+ FF+RS++ Q C +DC + R CQ CR QKC++ GMR+ Sbjct: 114 GKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRA 177
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000005620 (supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1 gene:EMLSAG00000005620 transcript:EMLSAT00000005620 description:"maker-LSalAtl2s301-augustus-gene-5.4") HSP 1 Score: 52.373 bits (124), Expect = 3.287e-10 Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 0 Query: 18 HYGAISCEGCKGFFKRSIRK---QLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGM 72 H+GA +CEGCK FF R+ K +C+ N C + K +R C+ CRL+KCL +GM Sbjct: 49 HFGAFTCEGCKSFFGRTCGKSNLNSISECKNNYSCVIDKKNRTSCKACRLRKCLRVGM 106
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000012965 (supercontig:LSalAtl2s:LSalAtl2s98:1224628:1226761:1 gene:EMLSAG00000012965 transcript:EMLSAT00000012965 description:"snap_masked-LSalAtl2s98-processed-gene-12.8") HSP 1 Score: 50.447 bits (119), Expect = 3.116e-9 Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 0 Query: 46 NKDCEVTKHHRNRCQYCRLQKCLAMGMRS 74 NK+C VTKH R CQYCR KCL++GM+S Sbjct: 27 NKNCVVTKHTRKHCQYCRFVKCLSVGMKS 55
BLAST of nuclear hormone receptor vs. L. salmonis genes
Match: EMLSAG00000007233 (supercontig:LSalAtl2s:LSalAtl2s405:178614:197434:1 gene:EMLSAG00000007233 transcript:EMLSAT00000007233 description:"maker-LSalAtl2s405-snap-gene-2.21") HSP 1 Score: 49.2914 bits (116), Expect = 6.829e-9 Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0 Query: 38 QLGYQCR-GNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 +L Y+C+ G C + K HRN+CQ CRL+KCL MGM D Sbjct: 60 KLIYRCQAGTGMCVIDKAHRNQCQACRLRKCLHMGMNKD 98
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE (RecName: Full=Retinoic acid receptor RXR-beta-A; AltName: Full=Nuclear receptor subfamily 2 group B member 2-A; AltName: Full=Retinoid X receptor beta-A) HSP 1 Score: 104.375 bits (259), Expect = 5.470e-27 Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR +HYG SCEGCKGFFKR++RK L Y CR NKDC V K RNRCQYCR QKCLAMGM+ + Sbjct: 129 GDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRCQYCRYQKCLAMGMKRE 193
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|1350914|sp|P28705.2|RXRG_MOUSE (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 103.99 bits (258), Expect = 6.762e-27 Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR +HYG SCEGCKGFFKR+IRK L Y CR NKDC + K RNRCQYCR QKCL MGM+ + Sbjct: 143 GDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|81888393|sp|Q5BJR8.1|RXRG_RAT (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 103.99 bits (258), Expect = 7.258e-27 Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR +HYG SCEGCKGFFKR+IRK L Y CR NKDC + K RNRCQYCR QKCL MGM+ + Sbjct: 143 GDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|119367365|sp|Q0VC20.1|RXRG_BOVIN (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 103.99 bits (258), Expect = 7.790e-27 Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR +HYG SCEGCKGFFKR+IRK L Y CR NKDC + K RNRCQYCR QKCL MGM+ + Sbjct: 143 GDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
BLAST of nuclear hormone receptor vs. SwissProt
Match: gi|167016572|sp|Q0GFF6.2|RXRG_PIG (RecName: Full=Retinoic acid receptor RXR-gamma; AltName: Full=Nuclear receptor subfamily 2 group B member 3; AltName: Full=Retinoid X receptor gamma) HSP 1 Score: 103.99 bits (258), Expect = 7.790e-27 Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR +HYG SCEGCKGFFKR+IRK L Y CR NKDC + K RNRCQYCR QKCL MGM+ + Sbjct: 143 GDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
BLAST of nuclear hormone receptor vs. nr
Match: gi|1339062313|ref|XP_023719796.1| (nuclear receptor subfamily 2 group C member 2 [Cryptotermes secundus] >gi|1330887827|gb|PNF21106.1| hypothetical protein B7P43_G05079 [Cryptotermes secundus]) HSP 1 Score: 136.732 bits (343), Expect = 2.962e-36 Identity = 62/70 (88.57%), Postives = 63/70 (90.00%), Query Frame = 0 Query: 9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 L + GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRGNK CEVTKHHRNRCQYCRLQKCLAMGMRSD Sbjct: 28 LCVVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKKCEVTKHHRNRCQYCRLQKCLAMGMRSD 97
BLAST of nuclear hormone receptor vs. nr
Match: gi|1069708268|ref|XP_018312022.1| (PREDICTED: orphan steroid hormone receptor 2-like isoform X4 [Trachymyrmex zeteki] >gi|1069708271|ref|XP_018312023.1| PREDICTED: orphan steroid hormone receptor 2-like isoform X4 [Trachymyrmex zeteki]) HSP 1 Score: 135.961 bits (341), Expect = 4.469e-36 Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSD Sbjct: 106 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSD 170
BLAST of nuclear hormone receptor vs. nr
Match: gi|1068400225|ref|XP_018048039.1| (PREDICTED: orphan steroid hormone receptor 2-like isoform X6 [Atta colombica] >gi|1068400229|ref|XP_018048040.1| PREDICTED: orphan steroid hormone receptor 2-like isoform X6 [Atta colombica]) HSP 1 Score: 135.961 bits (341), Expect = 5.626e-36 Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSD Sbjct: 108 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSD 172
BLAST of nuclear hormone receptor vs. nr
Match: gi|1070607020|ref|XP_018401164.1| (PREDICTED: nuclear receptor subfamily 2 group C member 2-like isoform X2 [Cyphomyrmex costatus] >gi|1070607022|ref|XP_018401166.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like isoform X2 [Cyphomyrmex costatus]) HSP 1 Score: 135.961 bits (341), Expect = 5.743e-36 Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSD Sbjct: 108 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSD 172
BLAST of nuclear hormone receptor vs. nr
Match: gi|1067107221|ref|XP_018013896.1| (PREDICTED: nuclear receptor subfamily 2 group C member 2-like isoform X1 [Hyalella azteca]) HSP 1 Score: 137.887 bits (346), Expect = 5.863e-36 Identity = 60/72 (83.33%), Postives = 61/72 (84.72%), Query Frame = 0 Query: 9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSDCK 77 L + GDR RHYGAISCEGCKGFFKRSIRKQLGY CR K CEVTKHHRNRCQYCRLQKCL MGMRSDCK Sbjct: 329 LCVVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYTCRNAKACEVTKHHRNRCQYCRLQKCLKMGMRSDCK 400
BLAST of nuclear hormone receptor vs. nr
Match: gi|749747363|ref|XP_011135802.1| (PREDICTED: orphan steroid hormone receptor 2 isoform X7 [Harpegnathos saltator]) HSP 1 Score: 135.961 bits (341), Expect = 6.923e-36 Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K+CEVTKHHRNRCQYCRLQKCLAMGMRSD Sbjct: 145 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKNCEVTKHHRNRCQYCRLQKCLAMGMRSD 209
BLAST of nuclear hormone receptor vs. nr
Match: gi|1153703339|ref|XP_020284947.1| (orphan steroid hormone receptor 2 isoform X5 [Pseudomyrmex gracilis]) HSP 1 Score: 136.346 bits (342), Expect = 7.334e-36 Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K+CEVTKHHRNRCQYCRLQKCLAMGMRSD Sbjct: 171 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKNCEVTKHHRNRCQYCRLQKCLAMGMRSD 235
BLAST of nuclear hormone receptor vs. nr
Match: gi|1227984908|ref|XP_021924110.1| (LOW QUALITY PROTEIN: orphan steroid hormone receptor 2 [Zootermopsis nevadensis]) HSP 1 Score: 135.576 bits (340), Expect = 7.343e-36 Identity = 62/70 (88.57%), Postives = 63/70 (90.00%), Query Frame = 0 Query: 9 LSLTRGDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 L + GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRGNK CEVTKHHRNRCQYCRLQKCLAMGMRSD Sbjct: 28 LCVVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGNKSCEVTKHHRNRCQYCRLQKCLAMGMRSD 97
BLAST of nuclear hormone receptor vs. nr
Match: gi|1068400205|ref|XP_018048033.1| (PREDICTED: orphan steroid hormone receptor 2-like isoform X2 [Atta colombica]) HSP 1 Score: 136.346 bits (342), Expect = 8.808e-36 Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K CEVTKHHRNRCQYCRLQKCLAMGMRSD Sbjct: 190 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKSCEVTKHHRNRCQYCRLQKCLAMGMRSD 254
BLAST of nuclear hormone receptor vs. nr
Match: gi|749747365|ref|XP_011135803.1| (PREDICTED: orphan steroid hormone receptor 2 isoform X8 [Harpegnathos saltator] >gi|749747367|ref|XP_011135804.1| PREDICTED: orphan steroid hormone receptor 2 isoform X8 [Harpegnathos saltator] >gi|749747371|ref|XP_011135806.1| PREDICTED: orphan steroid hormone receptor 2 isoform X8 [Harpegnathos saltator]) HSP 1 Score: 135.191 bits (339), Expect = 9.937e-36 Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 Query: 14 GDR---RHYGAISCEGCKGFFKRSIRKQLGYQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMRSD 75 GDR RHYGAISCEGCKGFFKRSIRKQLGYQCRG+K+CEVTKHHRNRCQYCRLQKCLAMGMRSD Sbjct: 125 GDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSKNCEVTKHHRNRCQYCRLQKCLAMGMRSD 189 The following BLAST results are available for this feature:
BLAST of nuclear hormone receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 25
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BLAST of nuclear hormone receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of nuclear hormone receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold58_size443543:330609..331203+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold58_size443543-processed-gene-3.1 ID=snap_masked-scaffold58_size443543-processed-gene-3.1|Name=nuclear hormone receptor|organism=Tigriopus kingsejongensis|type=gene|length=595bp|location=Sequence derived from alignment at scaffold58_size443543:330609..331203+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'nuclear hormone receptor' has the following synonyms
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