Tk01233, Tk01233 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk01233
Unique NameTk01233
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length454
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 328..352
e-value: 0.0013
score: 28.1
coord: 388..410
e-value: 2.6E-4
score: 30.3
coord: 358..382
e-value: 0.014
score: 24.6
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 330..352
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 390..410
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 360..382
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 328..357
score: 15.75
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 388..415
score: 13.193
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 358..387
score: 14.835
NoneNo IPR availableGENE3D3.30.160.60coord: 329..355
e-value: 4.8E-12
score: 47.4
NoneNo IPR availableGENE3D3.30.160.60coord: 356..380
e-value: 2.3E-13
score: 51.8
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 359..382
e-value: 7.8E-4
score: 19.7
coord: 328..352
e-value: 7.2E-5
score: 22.9
coord: 388..410
e-value: 1.7E-5
score: 24.9
NoneNo IPR availableGENE3D3.30.160.60coord: 381..413
e-value: 3.0E-11
score: 44.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 264..279
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..286
NoneNo IPR availablePANTHERPTHR44504FAMILY NOT NAMEDcoord: 318..414
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..454
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 339..397

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold160_size295910-snap-gene-1.37-mRNA-1maker-scaffold160_size295910-snap-gene-1.37-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk01233 ID=Tk01233|Name=Tk01233|organism=Tigriopus kingsejongensis|type=polypeptide|length=454bp
LDSIAFLTQVVSGSVHAFDLCHQQQQVTPEGELLSGRHTGRQPHNPPGGQ
MPQVKQPLSEGGSQNNHQSFSWSHPRGQAGKRAAMEPSPPLDMEDLDIGF
LDLANPSQLEWADMSSTGPDSFSSESLESFDDMRVLGVDLETLMSEDNKF
HPHEGSPSALIKTSLPKMEDLNYNTNLRFLADATAAPLPKTMMNPSLISN
PETSPNPHHMACHDYTNKVSYPAPSFPIQYPVILPTNSQRTGPTNQLPQV
SHSHRVVGLAKPTRSSPVRSSSKRTFPSHGFTNKPRVRGPRRIRELRQED
KDYLAHGTGIPRKNSPPKTHIREDDKIFPCEHPGCGKMYAKSSHLKAHMR
RHTGEKPFACAWPECGWRFSRSDELARHKRSHSGVKPYRCTICEKRFSRS
DHLAKHLKVHRRDRLYTYLAKMGYGTPSRRGRLSQNILNNEAVRNFIQTE
NISL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
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