Tk01343, Tk01343 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk01343
Unique NameTk01343
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length320
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 42..56
score: 34.77
coord: 211..225
score: 31.19
coord: 87..101
score: 42.92
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 269..315
e-value: 8.6
score: 11.1
coord: 60..100
e-value: 1.8E-10
score: 50.8
coord: 16..55
e-value: 3.7E-7
score: 39.8
coord: 143..182
e-value: 460.0
score: 0.2
coord: 103..141
e-value: 20.0
score: 8.8
coord: 185..224
e-value: 2.3E-6
score: 37.1
coord: 227..266
e-value: 0.071
score: 22.2
IPR001680WD40 repeatPFAMPF00400WD40coord: 65..100
e-value: 7.3E-6
score: 26.5
coord: 20..54
e-value: 2.4E-5
score: 24.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 67..109
score: 13.717
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 192..233
score: 11.945
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 23..64
score: 11.143
IPR013979Translation initiation factor, beta propellor-like domainPFAMPF08662eIF2Acoord: 109..212
e-value: 1.3E-5
score: 25.1
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 4..151
e-value: 1.1E-33
score: 118.6
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 152..320
e-value: 6.6E-29
score: 102.8
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 240..287
e-value: 2.5E-5
score: 24.4
NoneNo IPR availablePANTHERPTHR22839THO COMPLEX SUBUNIT 3 THO3coord: 6..314
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 87..101
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 23..275
score: 28.08
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 19..301

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
snap_masked-scaffold1057_size73593-processed-gene-0.18-mRNA-1snap_masked-scaffold1057_size73593-processed-gene-0.18-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk01343 ID=Tk01343|Name=Tk01343|organism=Tigriopus kingsejongensis|type=polypeptide|length=320bp
MVATKEVQDLQNKLKKSLKTKEYNAHAHKVHSVDWSCDGRRLASGSYDKT
VCVFSLGSDRLVKEATCRGHNDSVDQLCWHPHNPDLLATASGDKTVRIWD
ARTTKCCGTVSTKGENINISWSPDGKSIAVGNKEDLVTFIDVKSQKIRLE
EQFRYEVNELKWNNTGDLFFLTNGHGCVNVYSYPDMELLNVLPAHPGNCI
CIEFDPQGKYFAVGCADALVSLWDVNQLACVRTFNRLEWPVRAISFSHDG
KLLASASEDTVIDIAHVETGEKIQVIPVTAPTFTIAWHPKRYLLAYACDD
KEKYDRDTGSLKVWGYPSDD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR013979TIF_beta_prop-like
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR024977Apc4_WD40_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
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