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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 469..489 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 723..772 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 711..786 |
| None | No IPR available | PANTHER | PTHR22808:SF1 | TRNA CYTOSINE 34 -C 5 -METHYLTRANSFERASE | coord: 31..716 |
| None | No IPR available | PANTHER | PTHR22808 | NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING | coord: 31..716 |
| IPR023267 | RNA (C5-cytosine) methyltransferase | PRINTS | PR02008 | RCMTFAMILY | coord: 342..358
score: 54.17
coord: 181..195
score: 28.1
coord: 292..304
score: 70.39
coord: 210..220
score: 74.31
coord: 440..457
score: 42.13 |
| IPR023270 | tRNA (C5-cytosine) methyltransferase, NCL1 | PRINTS | PR02011 | RCMTNCL1 | coord: 156..177
score: 34.76
coord: 568..580
score: 47.51
coord: 376..395
score: 44.29 |
| IPR001678 | SAM-dependent methyltransferase RsmB/NOP2-type | PFAM | PF01189 | Methyltr_RsmB-F | coord: 199..456
e-value: 1.1E-38
score: 132.9 |
| IPR001678 | SAM-dependent methyltransferase RsmB/NOP2-type | PROSITE | PS51686 | SAM_MT_RSMB_NOP | coord: 86..458
score: 55.295 |
| IPR018314 | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site | PROSITE | PS01153 | NOL1_NOP2_SUN | coord: 291..302 |
| IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase | SUPERFAMILY | 53335 | S-adenosyl-L-methionine-dependent methyltransferases | coord: 145..391
coord: 434..458 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk02913 ID=Tk02913|Name=Tk02913|organism=Tigriopus kingsejongensis|type=polypeptide|length=786bp
LYLEFLGWTLRFSSVPGLGDSPWIMGGIRRGQRRQRTDKKKPRDPNDWSG
HKENRAYQDIVRENAKFVDFYRAQKVADNEADLAEMVRAFQTDLPASFRV
TGFRSQAVAVRNLIESQFFLELARLKEQQSGGTVSTPTAPIVEPKCLTWY
PERMAWQLNLTRKDIRREEAYFKLHNFLISETESGNISRQETVSMIPPLV
LDVQPHHKVLDMCAAPGSKTVQLIEAIHADETMIPEGLVVANDSDNSRCY
LLVHQAKRLQSPNVIVSNHDASIFPKIHVGQADGSSAVMKFDRVLCDAPC
SGDGTMRKNADIWPKWNGANSCNLHGIQYRIAKRGLELLAVGGKMVYSTC
SLNPVEDEAVVHRILRDCEDTVELVDVSAHVPGLKFKPGLSTWVLADKSN
TFYSKWEEVPEVHHTLMRPPMFPPSPEEAEKFHLERCMRILPHQQDTGGF
FVACLQKKAPCPWENKRTYDQVEKNAENGKRTIDSESDEVASKPRKKLSR
YQGFKEDPFVYFKKDTVEAEFDEIKEFFDFSDALKQEMFLTRCKTSRKNL
YFTSNLVRNILESNQDRLKVINTGVKAFAKCENKGSPCALRLAQEGSLMT
IPFLGKRIVTPSKKDLEVMLLANDIETPPKIADLSPVVKAQLDELSTGSI
AFVFKEKNAEGATTLLVELVGWKGKETVRAYVPKNDRVHYLRLIGGDTSK
YEKNKFEIKREAAATATPSDETAEKPTEGKENSTEGKQNSTEGKENSTEG
KEDSIEGKENSTEGKENSTEGKENTPMEATVDPAGE back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016428 | tRNA (cytosine-5-)-methyltransferase activity |
| GO:0008168 | methyltransferase activity |
| GO:0003723 | RNA binding |
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