Tk03360, Tk03360 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk03360
Unique NameTk03360
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length1028
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 10..35
NoneNo IPR availableGENE3D2.20.25.20coord: 280..347
e-value: 1.4E-7
score: 33.2
NoneNo IPR availableGENE3D1.20.120.1750coord: 348..420
e-value: 6.4E-12
score: 47.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 884..904
NoneNo IPR availablePANTHERPTHR11685:SF111E3 UBIQUITIN-PROTEIN LIGASE RNF19Acoord: 173..609
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 453..471
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 421..452
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 506..1028
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..420
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 472..505
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 264..329
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 188..271
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 354..410
NoneNo IPR availableTMHMMTMhelixcoord: 471..493
NoneNo IPR availableTMHMMTMhelixcoord: 428..450
IPR002867IBR domainSMARTSM00647ibrneu5coord: 343..407
e-value: 0.0028
score: 26.9
coord: 262..327
e-value: 1.3E-21
score: 87.8
IPR002867IBR domainPFAMPF01485IBRcoord: 264..327
e-value: 4.6E-13
score: 49.1
coord: 355..400
e-value: 3.5E-7
score: 30.2
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 296..364
e-value: 4.9
score: 5.3
coord: 193..240
e-value: 6.9E-5
score: 32.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 193..240
score: 11.117
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 193..240
e-value: 1.9E-4
score: 21.1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 189..273
e-value: 8.4E-13
score: 50.2
IPR031127E3 ubiquitin ligase RBR familyPANTHERPTHR11685RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAININGcoord: 173..609
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 211..220

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold496_size155344-snap-gene-0.25-mRNA-1maker-scaffold496_size155344-snap-gene-0.25-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk03360 ID=Tk03360|Name=Tk03360|organism=Tigriopus kingsejongensis|type=polypeptide|length=1028bp
MKTASNRFGRDSQRRERFQADRRKEQVERRSLKKKNRQHLDSEPQPPGPA
SNSADAPDGAHFVTLSIPDPAPKYSPTTHRKSTRTRPRAPGRFSLRRLFY
GNPLFPYPFFLGTAGPLGPGGINGSTPSSTRSRRTRGATSNWRSNYDGDS
ASERSVNPWRDTTSSGSPSLVGASSHNKSTTFIGPDGKPMRECSLCLVTL
GLDNFPNLLNCHHLFCFECLKMYVKIELQEGRVNIRCPQCVEPLHPNDIE
LFIGDKAGNLQHLYECLMLRRILATDPDTRWCPGPNCTYGVIAAGCASCP
KITCEKPGCGFSFCYHCKAEWHPNQTCDKARAQRQPSMRSSSVSFGQESR
TTSHAADVKVCPRCDVVIVKMDDGSCNHMTCSICGAEFCWLCMKEISDLH
YLSPSGCTFWGKKPWSRKKKLLWQLGTLVGAPVGIALLAGISIPAMIIGI
PVWVGRKLYSQYNKTMRYKRNLIITGGVLVAILVSPVIAALAVSIGVPIL
LAYVYGVVPISLCRSEGCGVSTTSNGVKIDVEEDMPYRPIVMDNCSANSV
PTTNNWNPSIGEMSLGASLSMGSASHLDYHAGSEADRESASNTAVAGTSR
TVSLASSSVLGGGHSLKGVTFGCNGVQFQHPMGGQTRVEIGADVHHGHRK
NKCSSSMEGLAETMSMRSAGTMSLMDPNQDGASTRGLAGSLLAYRTDTQS
VHSFRTGGEPSDFLPISGDEISLKSLPVPASNTGMQPNSSHPNPRSLSPT
VSCLSGDELSSGGGAIRRSTRKKTFEKQMSETSCLSFEDSTSERVRFDDN
VSFMDEKLTTNSGAASSSIVGVACVNATLETHVDPPVFFSNVKVSKANST
SVVPEETAEELALVISPEPKRNFLSSFQYGGHPSSSCEASEAGPLAEGPS
AHDSKKIEDRIARLVSVVESQDISALDARLDRLTKMVEGVMGAMETPSGL
RPGGADGRRPQLETNDLVGQQETTEYSVRYRPKLSSPPTLEPGVSIGEFR
AWRQAWTNYSMRRCPDCKDGRYVSRESS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002867IBR_dom
IPR001841Znf_RING
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
IPR031127E3_UB_ligase_RBR
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
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