Tk03729, Tk03729 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk03729
Unique NameTk03729
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length669
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 423..450
NoneNo IPR availableGENE3D4.10.400.10coord: 40..76
e-value: 1.6E-10
score: 42.4
NoneNo IPR availablePANTHERPTHR18945:SF750GLUTAMATE-GATED CHLORIDE CHANNELcoord: 169..654
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 401..424
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 425..637
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 658..669
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 336..360
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 638..657
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..335
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 361..400
NoneNo IPR availableTMHMMTMhelixcoord: 338..360
NoneNo IPR availableTMHMMTMhelixcoord: 634..656
NoneNo IPR availableTMHMMTMhelixcoord: 401..423
NoneNo IPR availableTMHMMTMhelixcoord: 367..386
IPR006201Neurotransmitter-gated ion-channelPRINTSPR00252NRIONCHANNELcoord: 330..342
score: 28.96
coord: 209..220
score: 47.78
coord: 255..269
score: 47.9
coord: 175..191
score: 35.75
IPR006201Neurotransmitter-gated ion-channelTIGRFAMTIGR00860TIGR00860coord: 169..450
e-value: 5.2E-115
score: 382.7
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 169..654
IPR006028Gamma-aminobutyric acid A receptor/Glycine receptor alphaPRINTSPR00253GABAARECEPTRcoord: 365..386
score: 55.95
coord: 635..655
score: 50.15
coord: 399..420
score: 53.54
coord: 339..359
score: 54.61
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLa_2coord: 43..81
e-value: 1.5E-7
score: 41.1
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPFAMPF00057Ldl_recept_acoord: 42..79
e-value: 1.5E-7
score: 31.4
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 43..80
score: 12.262
IPR002172Low-density lipoprotein (LDL) receptor class A repeatCDDcd00112LDLacoord: 47..79
e-value: 4.62787E-10
score: 52.9794
IPR006202Neurotransmitter-gated ion-channel ligand-binding domainPFAMPF02931Neur_chan_LBDcoord: 169..335
e-value: 3.3E-37
score: 127.9
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 343..437
e-value: 1.3E-27
score: 97.3
IPR036734Neurotransmitter-gated ion-channel ligand-binding domain superfamilyGENE3D2.70.170.10coord: 149..333
e-value: 7.7E-60
score: 203.7
IPR036734Neurotransmitter-gated ion-channel ligand-binding domain superfamilySUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 89..149
IPR036734Neurotransmitter-gated ion-channel ligand-binding domain superfamilySUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 169..335
IPR018000Neurotransmitter-gated ion-channel, conserved sitePROSITEPS00236NEUROTR_ION_CHANNELcoord: 255..269
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 57..79
IPR036719Neurotransmitter-gated ion-channel transmembrane domain superfamilySUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 596..657
coord: 338..474
IPR036055LDL receptor-like superfamilySUPERFAMILY57424LDL receptor-like modulecoord: 43..80

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold357_size197762-snap-gene-0.41-mRNA-1maker-scaffold357_size197762-snap-gene-0.41-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk03729 ID=Tk03729|Name=Tk03729|organism=Tigriopus kingsejongensis|type=polypeptide|length=669bp
MDPFAYAFHNTTQDYPLGKRSWYFVNESCLHNRFQIRRLKLTTCQAESQF
TCDDGTCIDIGGRCDQKRDCQDYSDEFDCKLVALNQFHYIKDYAPQEKGG
RKTEVNYHVEILSLDDIRELGMSLNLQFRLTLSWLDPRIIYHNLKACRTP
LKSVSDLKASVEEHWAAMDVDYEYSVQVTFREQWNDERLRYYDESQGRLK
YLTLTDPTKVWMPDTFFRNEKEARKHEIIVPNVYVRIFPNGEILYSIRIS
LTLACPMDLRLYPLDKQVCVLQIASYGWAKDDLIYQWKEKDPVQVVPGLH
LPRFTLEQYKSAYCDVITNTGEYSCLKVELIFKREFSYYLITIYVPCCML
VIVSWVSFWLDQNAIPARVSLGVTTLLTMSTQTSGINAQLPPVSYTKAID
VWTGVCQCFVFCALLEFALVNYASRSDMQRDRARERMERARRQWELENAD
MEPSPPPTGTNGPTHVMGPPGNLLRGSIGGATTLSGANSHQGMNHIGSAV
DIDGIPGFPLKKRGGHNFANALREMDGGEPYRGTTTYPHQNRSNEDLSYG
GMNSGYNTTQPSSLSYMLPQDMGRTCEVHMNSYPTGSGPGHGGGFAAGMT
GTSSLIGHTCTYLLCCGTRGLLSKFPSRAKRIDVISRFIFPLIFAIFNMA
YWLYYLFAKSKSPQLEEDN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR006028GABAA/Glycine_rcpt
IPR002172LDrepeatLR_classA_rpt
IPR006202Neur_chan_lig-bd
IPR006029Neurotrans-gated_channel_TM
IPR036734Neur_chan_lig-bd_sf
IPR018000Neurotransmitter_ion_chnl_CS
IPR023415LDLR_class-A_CS
IPR036719Neuro-gated_channel_TM_sf
IPR036055LDL_receptor-like_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004888transmembrane signaling receptor activity
GO:0005216ion channel activity
GO:0005515protein binding
GO:0005230extracellular ligand-gated ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0034220ion transmembrane transport
GO:0006811ion transport
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