Tk04316, Tk04316 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk04316
Unique NameTk04316
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length1425
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002126CadherinPRINTSPR00205CADHERINcoord: 352..371
score: 33.85
coord: 331..343
score: 35.16
coord: 570..587
score: 39.24
coord: 425..451
score: 31.87
coord: 36..65
score: 30.46
coord: 371..384
score: 40.52
IPR002126CadherinSMARTSM00112CA_2coord: 395..472
e-value: 1.3E-17
score: 74.6
coord: 279..371
e-value: 1.6E-18
score: 77.6
coord: 168..256
e-value: 0.024
score: 20.4
coord: 608..694
e-value: 3.6E-10
score: 49.8
coord: 58..142
e-value: 8.4E-10
score: 48.6
coord: 496..586
e-value: 1.3E-17
score: 74.5
IPR002126CadherinPFAMPF00028Cadherincoord: 264..342
e-value: 1.0E-16
score: 61.0
coord: 378..464
e-value: 5.3E-19
score: 68.4
coord: 479..577
e-value: 1.1E-10
score: 41.7
coord: 42..134
e-value: 7.0E-12
score: 45.5
IPR001791Laminin G domainSMARTSM00282LamG_3coord: 1017..1181
e-value: 6.7E-21
score: 85.4
IPR001791Laminin G domainPFAMPF02210Laminin_G_2coord: 1025..1179
e-value: 2.8E-18
score: 66.6
IPR001791Laminin G domainPROSITEPS50025LAM_G_DOMAINcoord: 997..1202
score: 25.209
NoneNo IPR availableGENE3D2.60.40.60coord: 35..135
e-value: 1.1E-22
score: 82.5
NoneNo IPR availableGENE3D2.60.40.60coord: 2..34
e-value: 5.2E-7
score: 31.9
coord: 150..256
e-value: 1.1E-9
score: 40.5
NoneNo IPR availableGENE3D2.60.40.60coord: 585..692
e-value: 4.6E-11
score: 45.1
NoneNo IPR availableGENE3D2.60.120.200coord: 997..1186
e-value: 4.8E-29
score: 103.3
NoneNo IPR availableGENE3D2.60.40.60coord: 369..469
e-value: 9.8E-28
score: 98.9
coord: 257..368
e-value: 1.7E-22
score: 82.0
coord: 470..584
e-value: 9.5E-19
score: 69.9
NoneNo IPR availableGENE3D2.10.25.10coord: 952..996
e-value: 3.1E-7
score: 32.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1381..1425
NoneNo IPR availablePANTHERPTHR43956:SF4NEURAL-CADHERINcoord: 605..1203
NoneNo IPR availablePANTHERPTHR43956:SF4NEURAL-CADHERINcoord: 1232..1391
NoneNo IPR availablePANTHERPTHR43956:SF4NEURAL-CADHERINcoord: 2..588
NoneNo IPR availablePANTHERPTHR43956FAMILY NOT NAMEDcoord: 605..1203
NoneNo IPR availablePANTHERPTHR43956FAMILY NOT NAMEDcoord: 2..588
coord: 1232..1391
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..1218
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 1219..1240
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1241..1425
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 707..818
score: 8.73
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 3..36
score: 10.923
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 605..698
score: 14.101
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 475..588
score: 21.95
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 374..474
score: 23.879
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 173..258
score: 13.202
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 258..373
score: 25.589
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 37..144
score: 19.955
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 706..797
e-value: 8.08807E-5
score: 40.7598
NoneNo IPR availableCDDcd00054EGF_CAcoord: 962..996
e-value: 7.15646E-5
score: 39.157
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 479..584
e-value: 2.4663E-19
score: 81.9761
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 40..135
e-value: 6.29437E-18
score: 78.1241
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 263..369
e-value: 9.25263E-24
score: 94.6877
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 597..692
e-value: 5.57014E-8
score: 49.6194
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 378..469
e-value: 1.38809E-26
score: 102.777
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 212..252
e-value: 1.72124E-6
score: 45.3822
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 6..32
e-value: 2.43275E-4
score: 39.6042
NoneNo IPR availableCDDcd00110LamGcoord: 999..1178
e-value: 1.05746E-20
score: 87.8588
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 955..998
NoneNo IPR availableTMHMMTMhelixcoord: 1218..1240
IPR000233Cadherin, cytoplasmic domainPFAMPF01049Cadherin_Ccoord: 1250..1383
e-value: 1.7E-43
score: 148.0
IPR027397Catenin binding domain superfamilyGENE3D4.10.900.10coord: 1293..1387
e-value: 3.8E-30
score: 105.7
IPR020894Cadherin conserved sitePROSITEPS00232CADHERIN_1coord: 576..586
IPR020894Cadherin conserved sitePROSITEPS00232CADHERIN_1coord: 24..34
IPR020894Cadherin conserved sitePROSITEPS00232CADHERIN_1coord: 361..371
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 956..996
score: 16.952
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 596..693
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 690..796
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 462..595
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 252..343
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 367..474
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 24..144
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 194..258
IPR013320Concanavalin A-like lectin/glucanase domain superfamilySUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 981..1202

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold228_size248166-snap-gene-0.12-mRNA-1maker-scaffold228_size248166-snap-gene-0.12-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk04316 ID=Tk04316|Name=Tk04316|organism=Tigriopus kingsejongensis|type=polypeptide|length=1425bp
LVSVAVKATDNGRPQLEDICSLTVKIKDKNDNAPVFDRATYDVPIAQDTQ
LGTQIMRISATDVDEGDNQKITYELKHVRIPGDSDYFNCNYLTGLVTLGY
KLDKPVGYVFQFKATATDAGSPPKNATIDVTIEVKESSNKPPSFVDGPGP
SISLNETLSDYAKPIAIYTARSNIPEDSTVFFQLVRGRTEQTNKEDTFRA
LASLSEPTVVHIYLAKALEYEKVSEYTLTLQVRNSPDLVAEALLTVRVID
ENNQAPVFTNVESGKVLEHEPPGTIVMQVSALDNDGTYPNNAVSYHISSR
NNPEIRSKFAIDPKTGVVTTKEEFDREKQSVYALTIDAQDGSPSALLRNG
QPNVTPQKFRVAIADKNDNPPYFPQKLYEAEIPEDQDVGSKVIEVRAFDK
DEEASITTYQIVNGNVGNVFNIEEQTGYIHVAKPLDYEMIKKYYLTIKAW
DGQYSSETSVEINIKNVNDMKPQFKLDKYTVELDEEEVPTYHIVSVSATD
PDIDDPSLPQNITYYLDPDSQTSQHFKIDSRTGDIRVVKKLDRDLPNGFP
TWTMYIFAKDENGEASGIENYVELQVHLRDINDNPPYLDLPTGLVWYENR
GQGDVGVLRASDYDTEENGPPFTFSLDGNVNHDIKQWFNVDQTSNGSYVL
QALTTFDREVFSHYDIPINICDTHNLCAVSILPLIIGDENDNPMEPGSSE
IFVYNYEGRAPDTQIGRVYVKDPDDWDLPDKTFTFKDKRQWDGQFALDRN
TGMITMKRGIRLDSLISTFEIDFLVEDPTHNQVGRSAVPAQVKVTVQKIP
KEAVIKSGSIRINGPPEDFVRPDVNGLSKRDKFATLMKRYLNATYFEVFT
VMPAGENGQMTDVRFAAHGSPYYKPEKLEGVLTKRKQDLAKSMGIDILMI
HIDECIHEKVHCEGGSCVNHLDISEEPVAIYTNTSSFVGVQARVVPHCGC
SAPAPPVHSCFPDPCLNNGTCSASNNGQYACDCPANNPEFFGPNCEQLAA
SFNGQGWSWHPGLPACGDSHLSFWFSTQMDVGTLIYIGPSPNNIVENVQD
FMALEIWKGKPRLLVNFGDGTKALKLEQRVDDGKAHYVVIRWTNDTIQME
LDDKTCSNEVSPAKNQCFVQISTHDWRNHYLNVNGPLHVGGVSFGGERFK
DISKEIGISRTDMPDGDGFAGCIRNMTFFGGGKTTLYDLGSPSDGENFTP
GCNDEFVQAVVAIGLNTNFLIAILVCLLVILVLVILLAVYRRRRNVFGDK
DMDCDIRENIINYEDEGGGEGDQTGYDLSVLRMMSDGTPALHAGDSKKMT
NPYRQQDPPPDIQTFLQTNKDRIDGDPDATPYDDLRHYAYEGDGNSNGSL
SSLNSGTSEADLEFDYLHNFGPRFKKLADMYGEEPDSDEDSEDLYGTRMH
RPGGSGMMPPPPPKHAGGVPSESWC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002126Cadherin
IPR001791Laminin_G
IPR000233Cadherin_cytoplasmic-dom
IPR027397Catenin_binding_dom_sf
IPR020894Cadherin_CS
IPR000742EGF-like_dom
IPR015919Cadherin-like
IPR013320ConA-like_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0007156homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007155cell adhesion
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005886plasma membrane
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