|
|
Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001650 | Helicase, C-terminal | SMART | SM00490 | helicmild6 | coord: 260..341
e-value: 5.8E-32
score: 122.2 |
| IPR001650 | Helicase, C-terminal | PFAM | PF00271 | Helicase_C | coord: 233..341
e-value: 2.5E-27
score: 95.3 |
| IPR001650 | Helicase, C-terminal | PROSITE | PS51194 | HELICASE_CTER | coord: 220..378
score: 19.97 |
| IPR001650 | Helicase, C-terminal | CDD | cd00079 | HELICc | coord: 221..349
e-value: 2.90877E-39
score: 135.058 |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain | SMART | SM00487 | ultradead3 | coord: 20..224
e-value: 2.5E-58
score: 209.8 |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain | PROSITE | PS51192 | HELICASE_ATP_BIND_1 | coord: 32..209
score: 30.698 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 215..364
e-value: 2.8E-44
score: 152.6 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 1..212
e-value: 1.8E-74
score: 251.6 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 356..416 |
| None | No IPR available | PANTHER | PTHR24031:SF556 | SUBFAMILY NOT NAMED | coord: 2..349 |
| None | No IPR available | PANTHER | PTHR24031 | RNA HELICASE | coord: 2..349 |
| None | No IPR available | CDD | cd00268 | DEADc | coord: 3..210
e-value: 3.76271E-88
score: 263.962 |
| IPR011545 | DEAD/DEAH box helicase domain | PFAM | PF00270 | DEAD | coord: 26..197
e-value: 6.3E-50
score: 169.3 |
| IPR000629 | ATP-dependent RNA helicase DEAD-box, conserved site | PROSITE | PS00039 | DEAD_ATP_HELICASE | coord: 155..163 |
| IPR014014 | RNA helicase, DEAD-box type, Q motif | PROSITE | PS51195 | Q_MOTIF | coord: 1..29
score: 12.392 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 75..353 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk04876 ID=Tk04876|Name=Tk04876|organism=Tigriopus kingsejongensis|type=polypeptide|length=416bp
MSFDSLGLDPALLRAVESSGYTSPSPIQAQAIPAVLAGNDILAAAQTGTG
KTAGFSLPLLQILSTSGKRKNATTPRALVVTPTRELAAQVGESLQKYGSE
LSPAQTTQIVFGGVKINPQIARLKRGVDVLVATPGRLLDLQQQGVISLAE
IEILVLDEADRMLDMGFIHDIKKLLKLMPKKRQTLLFSATFSKEIRTLAE
GLLINPVSIEVAPRNTTAERIDQKVYFAEKHDKIRLLGGLIEEGEWNQVL
VFTTTKHFANRLTERLCKMGFNSMAIHGNKSQNARTKALEGFKSGEIRIL
VATDVAARGIDINQLPYVVNYELPKVSEDYVHRIGRTGRAGKAGLAVSLP
DGNRVAAKPDVDGNSVNYTADVGNRPAYEPTGNERRPQRPRRPGQGGQGG
GQRGPGGQGRNRNRSA back to top
Annotated Terms
The following terms have been associated with this polypeptide:
|
