Tk07036, Tk07036 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk07036
Unique NameTk07036
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length592
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001628Zinc finger, nuclear hormone receptor-typePRINTSPR00047STROIDFINGERcoord: 216..231
score: 60.34
coord: 249..257
score: 58.94
coord: 257..265
score: 54.08
coord: 200..216
score: 55.33
IPR001628Zinc finger, nuclear hormone receptor-typeSMARTSM00399c4goldcoord: 197..268
e-value: 9.2E-36
score: 134.8
IPR001628Zinc finger, nuclear hormone receptor-typePFAMPF00105zf-C4coord: 199..266
e-value: 1.4E-27
score: 95.9
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS00031NUCLEAR_REC_DBD_1coord: 200..226
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS51030NUCLEAR_REC_DBD_2coord: 197..272
score: 20.753
IPR000003Retinoid X receptor/HNF4PRINTSPR00545RETINOIDXRcoord: 469..488
score: 32.04
coord: 268..281
score: 29.94
coord: 428..446
score: 46.53
IPR001723Nuclear hormone receptorPRINTSPR00398STRDHORMONERcoord: 440..455
score: 44.64
coord: 261..271
score: 35.07
coord: 362..378
score: 44.1
coord: 497..514
score: 32.15
coord: 341..362
score: 37.8
IPR000536Nuclear hormone receptor, ligand-binding domainSMARTSM00430holicoord: 340..509
e-value: 1.1E-43
score: 161.2
IPR000536Nuclear hormone receptor, ligand-binding domainPFAMPF00104Hormone_recepcoord: 326..520
e-value: 9.1E-34
score: 116.7
IPR000536Nuclear hormone receptor, ligand-binding domainPROSITEPS51843NR_LBDcoord: 293..538
score: 48.23
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 191..292
e-value: 2.6E-32
score: 113.0
NoneNo IPR availableGENE3D1.10.565.10coord: 293..544
e-value: 2.2E-82
score: 278.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..294
NoneNo IPR availablePANTHERPTHR24083:SF104TRANSCRIPTION FACTOR HNF-4 HOMOLOGcoord: 173..555
NoneNo IPR availablePANTHERPTHR24083NUCLEAR HORMONE RECEPTORcoord: 173..555
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..592
NoneNo IPR availableCDDcd06931NR_LBD_HNF4_likecoord: 297..534
e-value: 6.33361E-117
score: 344.358
NoneNo IPR availableCDDcd06960NR_DBD_HNF4Acoord: 200..275
e-value: 1.94321E-46
score: 155.425
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.475
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 196..281
IPR035500Nuclear hormone receptor-like domain superfamilySUPERFAMILY48508Nuclear receptor ligand-binding domaincoord: 266..535

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold1013_size70870-snap-gene-0.16-mRNA-1maker-scaffold1013_size70870-snap-gene-0.16-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk07036 ID=Tk07036|Name=Tk07036|organism=Tigriopus kingsejongensis|type=polypeptide|length=592bp
MAFFKLSMSNIRLLDLLMVLTQIQIHGEELPGHLLKLVPIPPFVPRFVHV
ELLKVPDGIFSHLKVLQLGATNRGSNSAPRSKHIPPGRQSGTTISIQTGK
ISHWGGERMTELTQLGVIPMVKLDSMGPMSTQTMTTTSQGTTFSVLTNMN
LMPTIIAGEDIMDSSSSNPMDNHLASTEVVTSLEATHSPEANGNVLPMNC
AICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRN
QCRFCRLRKCMKAGMKTDSVQHTRDRISSKRSTPESESSNPSISGLSVTT
LEKAELLSRHGQHGYDIQKDQLTNREIETKQLASIADIGDSMKQQLLILV
EWAKHIPAFCDLSIDDQVALLRAHAGEHLLLGVTRRSLHLNDILLLGNDM
IIPKDPQDWGNPWLNDTQDVVVRNIGLRVMNELVTPFRQLLMDDTEFACL
KAIVFFDPYARGLTDVGKIERLRYQVQVNLEDYIADRQYDTRGRFGKILL
TLPSLQSITWHMIEQISVAKNYGIAHIDNLLQEMLLGGAIYPQNGNGSTP
SSPSATSMALSNSMSLTSSLMNLDTSSTYNPPLQSVANLIQS
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001628Znf_hrmn_rcpt
IPR000003Retinoid-X_rcpt/HNF4
IPR001723Nuclear_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
IPR035500NHR_like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003700DNA-binding transcription factor activity
GO:0043565sequence-specific DNA binding
GO:0003677DNA binding
GO:0003707steroid hormone receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Add to Basket