|
Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 216..231 score: 60.34 coord: 249..257 score: 58.94 coord: 257..265 score: 54.08 coord: 200..216 score: 55.33 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | c4gold | coord: 197..268 e-value: 9.2E-36 score: 134.8 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 199..266 e-value: 1.4E-27 score: 95.9 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 200..226 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 197..272 score: 20.753 |
IPR000003 | Retinoid X receptor/HNF4 | PRINTS | PR00545 | RETINOIDXR | coord: 469..488 score: 32.04 coord: 268..281 score: 29.94 coord: 428..446 score: 46.53 |
IPR001723 | Nuclear hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 440..455 score: 44.64 coord: 261..271 score: 35.07 coord: 362..378 score: 44.1 coord: 497..514 score: 32.15 coord: 341..362 score: 37.8 |
IPR000536 | Nuclear hormone receptor, ligand-binding domain | SMART | SM00430 | holi | coord: 340..509 e-value: 1.1E-43 score: 161.2 |
IPR000536 | Nuclear hormone receptor, ligand-binding domain | PFAM | PF00104 | Hormone_recep | coord: 326..520 e-value: 9.1E-34 score: 116.7 |
IPR000536 | Nuclear hormone receptor, ligand-binding domain | PROSITE | PS51843 | NR_LBD | coord: 293..538 score: 48.23 |
IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 191..292 e-value: 2.6E-32 score: 113.0 |
None | No IPR available | GENE3D | 1.10.565.10 | | coord: 293..544 e-value: 2.2E-82 score: 278.2 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 271..294 |
None | No IPR available | PANTHER | PTHR24083:SF104 | TRANSCRIPTION FACTOR HNF-4 HOMOLOG | coord: 173..555 |
None | No IPR available | PANTHER | PTHR24083 | NUCLEAR HORMONE RECEPTOR | coord: 173..555 |
None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE_C_REGION | Signal peptide C-region | coord: 24..27 |
None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE_H_REGION | Signal peptide H-region | coord: 13..23 |
None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE_N_REGION | Signal peptide N-region | coord: 1..12 |
None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE | Signal Peptide | coord: 1..27 |
None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 28..592 |
None | No IPR available | CDD | cd06931 | NR_LBD_HNF4_like | coord: 297..534 e-value: 6.33361E-117 score: 344.358 |
None | No IPR available | CDD | cd06960 | NR_DBD_HNF4A | coord: 200..275 e-value: 1.94321E-46 score: 155.425 |
None | No IPR available | SIGNALP_EUK | SignalP-noTM | SignalP-noTM | coord: 1..27 score: 0.475 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 196..281 |
IPR035500 | Nuclear hormone receptor-like domain superfamily | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 266..535 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk07036 ID=Tk07036|Name=Tk07036|organism=Tigriopus kingsejongensis|type=polypeptide|length=592bp MAFFKLSMSNIRLLDLLMVLTQIQIHGEELPGHLLKLVPIPPFVPRFVHV ELLKVPDGIFSHLKVLQLGATNRGSNSAPRSKHIPPGRQSGTTISIQTGK ISHWGGERMTELTQLGVIPMVKLDSMGPMSTQTMTTTSQGTTFSVLTNMN LMPTIIAGEDIMDSSSSNPMDNHLASTEVVTSLEATHSPEANGNVLPMNC AICGDKATGKHYGAASCDGCKGFFRRSVRKKQAYICRFYRNCVVTKDKRN QCRFCRLRKCMKAGMKTDSVQHTRDRISSKRSTPESESSNPSISGLSVTT LEKAELLSRHGQHGYDIQKDQLTNREIETKQLASIADIGDSMKQQLLILV EWAKHIPAFCDLSIDDQVALLRAHAGEHLLLGVTRRSLHLNDILLLGNDM IIPKDPQDWGNPWLNDTQDVVVRNIGLRVMNELVTPFRQLLMDDTEFACL KAIVFFDPYARGLTDVGKIERLRYQVQVNLEDYIADRQYDTRGRFGKILL TLPSLQSITWHMIEQISVAKNYGIAHIDNLLQEMLLGGAIYPQNGNGSTP SSPSATSMALSNSMSLTSSLMNLDTSSTYNPPLQSVANLIQS back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Cellular Component
Term | Definition |
GO:0005634 | nucleus |
|