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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 68..84
score: 57.38
coord: 84..99
score: 60.45
coord: 117..125
score: 63.42
coord: 125..133
score: 53.15 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | c4gold | coord: 65..136
e-value: 2.3E-35
score: 133.5 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 67..135
e-value: 2.0E-30
score: 105.0 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 68..94 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 65..140
score: 20.582 |
| IPR001723 | Nuclear hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 129..139
score: 50.18
coord: 298..313
score: 40.81
coord: 357..374
score: 46.25
coord: 209..230
score: 37.8
coord: 230..246
score: 37.73 |
| IPR000003 | Retinoid X receptor/HNF4 | PRINTS | PR00545 | RETINOIDXR | coord: 329..348
score: 59.28
coord: 286..304
score: 66.91
coord: 260..285
score: 50.09
coord: 136..149
score: 60.4 |
| IPR000536 | Nuclear hormone receptor, ligand-binding domain | SMART | SM00430 | holi | coord: 208..369
e-value: 6.9E-42
score: 155.2 |
| IPR000536 | Nuclear hormone receptor, ligand-binding domain | PFAM | PF00104 | Hormone_recep | coord: 213..382
e-value: 5.3E-34
score: 117.5 |
| IPR000536 | Nuclear hormone receptor, ligand-binding domain | PROSITE | PS51843 | NR_LBD | coord: 166..398
score: 45.642 |
| IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 61..160
e-value: 4.2E-35
score: 122.0 |
| None | No IPR available | GENE3D | 1.10.565.10 | | coord: 169..386
e-value: 1.1E-69
score: 236.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 139..162 |
| None | No IPR available | PANTHER | PTHR24083:SF103 | PROTEIN ULTRASPIRACLE | coord: 56..385 |
| None | No IPR available | PANTHER | PTHR24083 | NUCLEAR HORMONE RECEPTOR | coord: 56..385 |
| None | No IPR available | CDD | cd06943 | NR_LBD_RXR_like | coord: 168..380
e-value: 2.93379E-103
score: 302.67 |
| None | No IPR available | CDD | cd06956 | NR_DBD_RXR | coord: 66..142
e-value: 9.84257E-52
score: 165.799 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 66..146 |
| IPR035500 | Nuclear hormone receptor-like domain superfamily | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 134..384 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk07205 ID=Tk07205|Name=Tk07205|organism=Tigriopus kingsejongensis|type=polypeptide|length=412bp
MAMDPAHSLMEGGVPPTPPLAGLAHPPQSPLELKPDVSLLLNAHSPALPR
PTSPAVHYPPLSGSKHFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKEL
VYACRENKACIIDKRQRNRCQYCRYMKCLATGMRREAVQEERNRGGHKGA
EAAEPVESSTGAGGLGGEMAIDRIVAAEHISEQGGAFSRQESDDLQAHMP
GGFDGDQPNKRKMLQQLVEWAKHIPHFTDLKIEDRIKLIRAGWNELLIAG
CAFRSMNQEDGILWADSQFIKRENAHLAGVGDIFDRVLVELVGKMKEMKM
DKAELGCLRAIILFNPDAKGLEQDPALQVESFREKVYATLEEYCRTNHEN
EPSRFAKLLLRLPALRSIGLKCVEHLFFYKLIKDDGPNGNGADVNDVAAQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Cellular Component
| Term | Definition |
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| GO:0005634 | nucleus |
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