Tk07836, Tk07836 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk07836
Unique NameTk07836
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length885
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013497DNA topoisomerase, type IA, centralPRINTSPR00417PRTPISMRASEIcoord: 532..546
score: 31.41
coord: 356..365
score: 50.33
coord: 433..449
score: 24.26
coord: 236..254
score: 36.65
coord: 136..149
score: 46.95
IPR013497DNA topoisomerase, type IA, centralPFAMPF01131Topoisom_baccoord: 194..608
e-value: 1.6E-120
score: 402.8
IPR013497DNA topoisomerase, type IA, centralCDDcd00186TOP1Accoord: 196..618
e-value: 9.11737E-142
score: 423.554
IPR003601DNA topoisomerase, type IA, domain 2SMARTSM00436topIban2coord: 170..266
e-value: 9.0E-37
score: 138.2
IPR003602DNA topoisomerase, type IA, DNA-binding domainSMARTSM00437topIaneu2coord: 314..570
e-value: 3.6E-85
score: 298.9
IPR006171TOPRIM domainSMARTSM00493toprim5coord: 27..162
e-value: 1.2E-17
score: 74.7
IPR006171TOPRIM domainPFAMPF01751Toprimcoord: 29..179
e-value: 3.1E-14
score: 52.9
IPR006171TOPRIM domainPROSITEPS50880TOPRIMcoord: 27..177
score: 10.855
IPR013825DNA topoisomerase, type IA, central region, subdomain 2GENE3D2.70.20.10coord: 448..516
e-value: 3.2E-156
score: 522.0
coord: 260..321
e-value: 3.2E-156
score: 522.0
NoneNo IPR availableGENE3D3.40.50.140coord: 21..194
e-value: 8.1E-50
score: 171.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 846..875
NoneNo IPR availablePANTHERPTHR11390:SF20DNA TOPOISOMERASE 3-BETA-1coord: 25..862
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 39..885
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..38
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
IPR013824DNA topoisomerase, type IA, central region, subdomain 1GENE3D1.10.460.10coord: 201..259
e-value: 3.2E-156
score: 522.0
coord: 517..619
e-value: 3.2E-156
score: 522.0
IPR013826DNA topoisomerase, type IA, central region, subdomain 3GENE3D1.10.290.10coord: 322..447
e-value: 3.2E-156
score: 522.0
IPR000380DNA topoisomerase, type IAPANTHERPTHR11390PROKARYOTIC DNA TOPOISOMERASEcoord: 25..862
IPR034144DNA topoisomerase 3-like, TOPRIM domainCDDcd03362TOPRIM_TopoIA_TopoIIIcoord: 30..191
e-value: 5.21459E-46
score: 159.706
IPR023405DNA topoisomerase, type IA, core domainSUPERFAMILY56712Prokaryotic type I DNA topoisomerasecoord: 29..621

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold1517_size37798-snap-gene-0.13-mRNA-1maker-scaffold1517_size37798-snap-gene-0.13-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk07836 ID=Tk07836|Name=Tk07836|organism=Tigriopus kingsejongensis|type=polypeptide|length=885bp
LASLFGLLGLSVAWVLIATAPFCGMVGVFMVAEKPSLALSIAQILSNHKC
SSHKGFNGACSVHEWTGTFQGLAGVHFKMTSVCGHVNTTDFPAKYNNWDK
VDPSELFLCDTEKKEATPKLKMPAFLASEAKNNEFLVLWLDCDKEGENIC
FEVIHSVLDSMKRPPGNHRQVHRAKFSSITDKDIKLAMNNLGEPDENQSK
SVDARQELDLRIGCAFTRFQTKFFQGKYGDLDSSLISYGPCQTPTLGFCV
DRHDIIQTFKPEPYWTIAVKVKLGVSERQFPIDWDRQRCFDKEVAQMFLS
DVKTHKYATITSITAKEKAKERPIALNTVELMRMASSGLGMGPHHAMQIA
EKLYIQGFISYPRTESTHYSENFDLRDALRQQQNSSDWGPEVKEILSQGV
NKPKKGHDAGDHPPITPMRAASRDQFDSDSWRIYDYVVRHFIATLSRNCK
YLSTVIAFKIGDESFSLTGKKTIDPGFTAVMSWSAASDDETLPNVNQGDE
LMIEDVRLLEKQTSPPDYLTESDLITLMEKHGIGTDASIPVHINNICQRN
YVTIGSGRKLIPTTLGIVLVHGYLKIDPDLVHPQMRSGVEEQLDLIALGK
ANYKSVLKHTLEVFKLKFQYFVTNISGMDQLFEVSFSSLANSGRPFSRCG
KCRRFMKYIMAKPSRLYCSTCDETLGLPQNGNIKLYQELKCPLDDFEILY
VTAGPGGKSYIFCPYCYNNPPFGEMRKDMGCNSCTHPTCSHGQSSNGVSQ
CVECETGILVLDPSSGPKWKLGCNRCDVIIRLFDDAAKVTVLNEKSCSEC
DAQLMKVEYKEGKTKLEEGELVGEGCIYCEQSLSGLVEKHHAVFMKRRPN
RQGQGTGRGRGKRGRGGRGRKAPKDKMAQLAAYFV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013497Topo_IA_cen
IPR003601Topo_IA_2
IPR003602Topo_IA_DNA-bd_dom
IPR006171TOPRIM_domain
IPR013825Topo_IA_cen_sub2
IPR013824Topo_IA_cen_sub1
IPR013826Topo_IA_cen_sub3
IPR000380Topo_IA
IPR034144TOPRIM_TopoIII
IPR023405Topo_IA_core_domain
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003916DNA topoisomerase activity
GO:0003917DNA topoisomerase type I activity
Vocabulary: Biological Process
TermDefinition
GO:0006265DNA topological change
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