Tk07928, Tk07928 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk07928
Unique NameTk07928
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length470
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006201Neurotransmitter-gated ion-channelPRINTSPR00252NRIONCHANNELcoord: 141..152
score: 52.75
coord: 108..124
score: 30.37
coord: 186..200
score: 44.56
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 59..465
IPR036734Neurotransmitter-gated ion-channel ligand-binding domain superfamilyGENE3D2.70.170.10coord: 59..274
e-value: 5.0E-67
score: 227.4
IPR036734Neurotransmitter-gated ion-channel ligand-binding domain superfamilySUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 62..269
IPR006202Neurotransmitter-gated ion-channel ligand-binding domainPFAMPF02931Neur_chan_LBDcoord: 64..269
e-value: 4.6E-56
score: 189.6
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 279..394
e-value: 1.8E-6
score: 28.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 409..423
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 409..428
NoneNo IPR availablePANTHERPTHR18945:SF597NICOTINIC ACETYLCHOLINE RECEPTOR BETA 3 DBETA3 SUBUNITcoord: 59..465
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 307..326
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 327..337
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 470..470
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 338..358
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 390..442
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 370..389
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 296..306
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 276..295
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 443..469
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..275
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 359..369
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.736
NoneNo IPR availableTMHMMTMhelixcoord: 305..324
NoneNo IPR availableTMHMMTMhelixcoord: 276..298
NoneNo IPR availableTMHMMTMhelixcoord: 443..465
NoneNo IPR availableTMHMMTMhelixcoord: 334..356
IPR036719Neurotransmitter-gated ion-channel transmembrane domain superfamilySUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 276..469

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold169_size292178-snap-gene-0.11-mRNA-1maker-scaffold169_size292178-snap-gene-0.11-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk07928 ID=Tk07928|Name=Tk07928|organism=Tigriopus kingsejongensis|type=polypeptide|length=470bp
MWALQYALTCAFIAATAGQDDTTANPPVSTPPPEVPEAPEVPVSAPISTQ
EVTICDKGRSPRQKLRCHLLEHYDRLVHPVMDASDTVTVAIGMAIIHLDI
IEIKSQMNIDAWMRFGWRDEFLVWNPSEHGNLTQLHFAVEEIWKPDIFLY
NSAESVKFDPYGQTHFLVSNTGDVLWVPPAHLKAFCKLDLRYWPLDAQEC
KLKFGSWTSHGNQIDLDLYRNMTTVEHLDFYTDNREWISLASVAEKNRIT
YPCCKETYPDVTFEFILQRYSPAYKAIFVLPCLIIMLMTICCFLLPPTAG
EKMTINGFAFVTCCLYLIYFASALPFHNKTVPLLVTFYSNTAGLIGIALL
LNVTCVSFSRERKYNGPPKFLKVAFSGALGKFLCLGNYYHQVSSTHQRLV
LELTDMAESDQMDEREQDNGRRMEDGPISPCSVENQSGIMRDWILVAAGL
ERFFFILYTIVFAVVTMVYA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR036734Neur_chan_lig-bd_sf
IPR006202Neur_chan_lig-bd
IPR006029Neurotrans-gated_channel_TM
IPR036719Neuro-gated_channel_TM_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004888transmembrane signaling receptor activity
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0034220ion transmembrane transport
GO:0006811ion transport
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