Tk09705, Tk09705 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk09705
Unique NameTk09705
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length986
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 675..695
NoneNo IPR availableGENE3D2.20.25.410coord: 247..290
e-value: 6.9E-12
score: 46.8
NoneNo IPR availableGENE3D3.30.70.2850coord: 527..697
e-value: 2.1E-12
score: 49.2
NoneNo IPR availableGENE3D1.10.357.120coord: 349..446
e-value: 5.3E-9
score: 38.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 738..753
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 693..753
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 77..978
NoneNo IPR availableCDDcd02735RNAP_I_Rpa1_Ccoord: 439..975
e-value: 8.851E-105
score: 326.842
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 88..341
coord: 401..591
coord: 801..977
IPR038120RNA polymerase Rpb1, funnel domain superfamilyGENE3D1.10.132.30coord: 65..209
e-value: 1.4E-46
score: 160.7
IPR007083RNA polymerase Rpb1, domain 4PFAMPF05000RNA_pol_Rpb1_4coord: 116..200
e-value: 1.2E-21
score: 76.6
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 207..926
e-value: 1.3E-93
score: 313.2
IPR015699DNA-directed RNA pol I, largest subunitPANTHERPTHR19376:SF11DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1coord: 77..978

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold1466_size39939-snap-gene-0.10-mRNA-1maker-scaffold1466_size39939-snap-gene-0.10-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk09705 ID=Tk09705|Name=Tk09705|organism=Tigriopus kingsejongensis|type=polypeptide|length=986bp
MPSGDPFVALRDLQVMRVLHGPAQRRTGAGPSSRVYGPRARSEVPSRPSP
GSGWSGWGRGPRVRPRNQLAANGVNLKYDDPSDINEEELKDTMEQFHREW
KAIPKRRVELDRAYKDKLAPATNDINGACLPRGLIQRFPYNNLQLMVQAG
AKGSTVNTMQISCLLGQIELEGKRPPIMISGKSLPSFRPYDTQPRAGGFI
DGRFMSGIRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKLLEGLVV
NYDMTVRDSDGSVIQFQYGEDSLDVCKAQYLVPEQLDFLVNNKKSILDQK
AIELAQRYTAVDKLDRAKRKMTKWKIKHGGKTHRDTGFLRFCLKKGRDHP
ELATQVSKMGRTKLDDLLLDQWQNLTTDERKHYNHKSPLCPDPVAHEFRP
DSNFGSVTEAVDEMIESYLQDKDPVKFETNEFRDMMYLKAMHAMVEPGEP
VGVLAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREVLMVASANIK
TPSMTIPFLPGLRDKDRDLLRIKLNRITLHDVLENVHVTEKIQLHGKRRR
LVTLRFNFLPRKSYKDRFGMTPAKILSYFEKFFIRKVFFPTLAALTKDKQ
VVVESAVDSALQSMNKTDSHDEDDIADKNMEKMDRAGVGEGHASSDEEDL
PDDADATDARKKNRQADDDHEEGLSEDEEAMVKDLATQLDDFLEERDPDD
VKPVSSLMSSRVASPTLEQDDGFGEMDTKEEEIKGESKSANTTQTREALN
MSQTEATKRRLWVQEMGDAKGFATIVDYIFDTEKELWCQLSLGFEVAHKT
LDMSNVVKKAAEKAVIHEVKNIKRAFLINNEKDEPCLTTDGVNIEAMFRH
DNLLDLRRLTSNNIHEMARYYGIEAANRTIVSEIINVFKAYGIVVNPRHL
TLIADFMTFDGSYKPFNRIGIENNPSPLQQMTFETAISFLRNATLGGKTD
TLDSPSACIVLGKPCFGGTSSFKVVQKLMADVKENP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038120Rpb1_funnel_sf
IPR007083RNA_pol_Rpb1_4
IPR007081RNA_pol_Rpb1_5
IPR015699DNA-dir_RNA_pol1_lsu
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
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