Tk10678, Tk10678 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk10678
Unique NameTk10678
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length159
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006028Gamma-aminobutyric acid A receptor/Glycine receptor alphaPRINTSPR00253GABAARECEPTRcoord: 3..23
score: 45.39
coord: 63..84
score: 37.85
coord: 117..137
score: 41.26
coord: 29..50
score: 24.26
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 8..89
e-value: 2.5E-9
score: 37.5
NoneNo IPR availableGENE3D1.20.58.390coord: 1..150
e-value: 1.3E-32
score: 114.6
NoneNo IPR availablePANTHERPTHR18945:SF538RH55021Pcoord: 6..89
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 55..65
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 117..136
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..86
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 87..116
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 137..159
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 25..35
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..54
NoneNo IPR availableTMHMMTMhelixcoord: 36..53
NoneNo IPR availableTMHMMTMhelixcoord: 117..136
NoneNo IPR availableTMHMMTMhelixcoord: 63..85
NoneNo IPR availableTMHMMTMhelixcoord: 4..23
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 6..89
IPR036719Neurotransmitter-gated ion-channel transmembrane domain superfamilySUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 3..141

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold261_size233860-snap-gene-0.11-mRNA-1maker-scaffold261_size233860-snap-gene-0.11-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk10678 ID=Tk10678|Name=Tk10678|organism=Tigriopus kingsejongensis|type=polypeptide|length=159bp
LKYLSIYYLPSGLFVLVSWVSFLIPPDQVAGRMSMLITLFLVLINIFGSI
AAQMPTAEGLTAISGWMLVCIFFVFGALCCYAYLLWRMKPTFLVKKTERT
ADEIRSKQRQRVKFDDTCLVVFPVVFFLFNLAYWAVCLNNPPSEEAQIRR
PFKTTLSDI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006028GABAA/Glycine_rcpt
IPR006029Neurotrans-gated_channel_TM
IPR006201Neur_channel
IPR036719Neuro-gated_channel_TM_sf
Vocabulary: Molecular Function
TermDefinition
GO:0004888transmembrane signaling receptor activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0034220ion transmembrane transport
GO:0006811ion transport
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