Tk11514, Tk11514 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk11514
Unique NameTk11514
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length532
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006201Neurotransmitter-gated ion-channelPRINTSPR00252NRIONCHANNELcoord: 103..114
score: 54.56
coord: 70..86
score: 39.98
coord: 232..244
score: 40.34
coord: 147..161
score: 52.34
IPR006201Neurotransmitter-gated ion-channelTIGRFAMTIGR00860TIGR00860coord: 20..502
e-value: 2.7E-105
score: 350.7
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 16..506
IPR002394Nicotinic acetylcholine receptorPRINTSPR00254NICOTINICRcoord: 91..105
score: 43.78
coord: 109..121
score: 67.01
coord: 127..145
score: 53.8
coord: 57..73
score: 43.79
IPR006202Neurotransmitter-gated ion-channel ligand-binding domainPFAMPF02931Neur_chan_LBDcoord: 24..237
e-value: 7.8E-78
score: 260.7
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 245..499
e-value: 1.0E-74
score: 251.5
NoneNo IPR availableGENE3D1.20.58.390coord: 242..355
e-value: 3.2E-46
score: 158.4
NoneNo IPR availableGENE3D1.20.58.390coord: 439..514
e-value: 2.4E-16
score: 61.9
NoneNo IPR availablePANTHERPTHR18945:SF430ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-LIKE 2coord: 16..506
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 263..273
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..238
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 293..303
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 326..482
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 504..532
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 274..292
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 483..503
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 239..262
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 304..325
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.671
NoneNo IPR availableTMHMMTMhelixcoord: 239..261
NoneNo IPR availableTMHMMTMhelixcoord: 270..292
NoneNo IPR availableTMHMMTMhelixcoord: 483..505
NoneNo IPR availableTMHMMTMhelixcoord: 305..327
IPR036734Neurotransmitter-gated ion-channel ligand-binding domain superfamilyGENE3D2.70.170.10coord: 20..241
e-value: 1.5E-89
score: 301.1
IPR036734Neurotransmitter-gated ion-channel ligand-binding domain superfamilySUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 22..237
IPR018000Neurotransmitter-gated ion-channel, conserved sitePROSITEPS00236NEUROTR_ION_CHANNELcoord: 147..161
IPR036719Neurotransmitter-gated ion-channel transmembrane domain superfamilySUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 239..509

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold33_size549341-snap-gene-0.15-mRNA-1maker-scaffold33_size549341-snap-gene-0.15-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk11514 ID=Tk11514|Name=Tk11514|organism=Tigriopus kingsejongensis|type=polypeptide|length=532bp
MLVGLVASLLVYNLVGLEASPDAKRLYDDLLSNYNRLIRPVGNSSDRLTV
KLGLKLSQIIGVDMKRQIVITNVWVEQEWHDYKLKWDPEEYGGVRHLHVP
SQNIWLPDIVLYNNADGNYEVTIMTKAVLHYSGKVTWNPPAIYKSSCDID
VEFFPFDEQKCFMKFGSWTYDGYMVDLRHINQKKGTNRIEMGMDLQEYYI
STEWDLMDTWAVRNEKYYPCCEEPYPDIFFNLILRRKSLFYTVNVIIPCV
GISFLSVLVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSKSVPL
LGKYLLFTMILVTCSVVVTIGVLNVNFRTPATHKMAPWVKKTFVDVLPKY
LFIRRPEPEEDVDDLGVMYETSKSTSNLVSSKELPMITENSGLTNNDNLA
YPLSPTDDWPSEGLYSTTFDEKHSHLIPNRDFVRPQEEPSTLNPAVERAM
NALKFVAQHVKNEDNFEGFADDWKYVAMVLDRILLWTFTVACVLGTCLII
MAAPTHHDSRKPIDVIYSKIDKKNTIFTMNNL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR002394Nicotinic_acetylcholine_rcpt
IPR006202Neur_chan_lig-bd
IPR006029Neurotrans-gated_channel_TM
IPR036734Neur_chan_lig-bd_sf
IPR018000Neurotransmitter_ion_chnl_CS
IPR036719Neuro-gated_channel_TM_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0045211postsynaptic membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004888transmembrane signaling receptor activity
GO:0005216ion channel activity
GO:0022848acetylcholine-gated cation-selective channel activity
GO:0005230extracellular ligand-gated ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0034220ion transmembrane transport
GO:0006811ion transport
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