Tk11517, Tk11517 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk11517
Unique NameTk11517
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length457
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001723Nuclear hormone receptorPRINTSPR00398STRDHORMONERcoord: 225..235
score: 44.85
coord: 276..297
score: 26.14
coord: 417..434
score: 30.57
coord: 360..375
score: 30.5
coord: 297..313
score: 45.57
IPR001628Zinc finger, nuclear hormone receptor-typePRINTSPR00047STROIDFINGERcoord: 122..130
score: 64.76
coord: 130..138
score: 59.35
coord: 88..103
score: 49.85
coord: 72..88
score: 53.11
IPR001628Zinc finger, nuclear hormone receptor-typeSMARTSM00399c4goldcoord: 160..232
e-value: 2.0E-36
score: 137.0
coord: 69..141
e-value: 2.0E-36
score: 137.0
IPR001628Zinc finger, nuclear hormone receptor-typePFAMPF00105zf-C4coord: 162..231
e-value: 6.2E-28
score: 97.0
coord: 71..140
e-value: 6.2E-28
score: 97.0
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS00031NUCLEAR_REC_DBD_1coord: 72..98
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS00031NUCLEAR_REC_DBD_1coord: 163..189
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS51030NUCLEAR_REC_DBD_2coord: 69..145
score: 19.07
IPR001628Zinc finger, nuclear hormone receptor-typePROSITEPS51030NUCLEAR_REC_DBD_2coord: 160..236
score: 19.815
IPR000536Nuclear hormone receptor, ligand-binding domainSMARTSM00430holicoord: 275..429
e-value: 3.9E-27
score: 106.1
IPR000536Nuclear hormone receptor, ligand-binding domainPFAMPF00104Hormone_recepcoord: 274..440
e-value: 1.9E-21
score: 76.5
IPR000536Nuclear hormone receptor, ligand-binding domainPROSITEPS51843NR_LBDcoord: 243..457
score: 37.051
NoneNo IPR availableGENE3D1.10.565.10coord: 243..457
e-value: 5.1E-59
score: 201.3
NoneNo IPR availablePANTHERPTHR24083NUCLEAR HORMONE RECEPTORcoord: 62..141
coord: 160..252
NoneNo IPR availablePANTHERPTHR24083NUCLEAR HORMONE RECEPTORcoord: 270..456
NoneNo IPR availablePANTHERPTHR24083:SF4PHOTORECEPTOR-SPECIFIC NUCLEAR RECEPTORcoord: 62..141
NoneNo IPR availablePANTHERPTHR24083:SF4PHOTORECEPTOR-SPECIFIC NUCLEAR RECEPTORcoord: 270..456
NoneNo IPR availablePANTHERPTHR24083:SF4PHOTORECEPTOR-SPECIFIC NUCLEAR RECEPTORcoord: 160..252
NoneNo IPR availableCDDcd06970NR_DBD_PNRcoord: 161..246
e-value: 4.20105E-57
score: 181.679
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 70..146
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 161..245
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 154..242
e-value: 2.9E-31
score: 109.3
coord: 63..150
e-value: 4.5E-29
score: 102.3
IPR035500Nuclear hormone receptor-like domain superfamilySUPERFAMILY48508Nuclear receptor ligand-binding domaincoord: 230..456

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold33_size549341-snap-gene-0.17-mRNA-1maker-scaffold33_size549341-snap-gene-0.17-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk11517 ID=Tk11517|Name=Tk11517|organism=Tigriopus kingsejongensis|type=polypeptide|length=457bp
METWRAFHSCSLEERPREGSLALQRHYEVDQQDGGSWSCLTASSLRSQHP
VFSADIKDLSGNGSDCSGNLLCIVCGDVSSGKHYGILACNGCSGFFKRSV
RRRLIYRCQAGTGTCIIDKAHRNQCQACRLKKCLNMGMNKDVFSADIKDL
SGNGSDCSGNLLCIVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQ
AGTGTCIIDKAHRNQCQACRLKKCLNMGMNKDAVQNERQPRNTATVKPES
LPSMESDKIMRETVGAFGPPENNHEICARLLFMAVKWTKNLTSFVSLPFR
DQVTLLEESWSELFLLCAIQWCLPLEKPSLFSLTDFEVVSTDTSDLLHHL
SLMFGRFKAMGVNPAEFACMKAVLLFKPETVGLKDTTQVENLQDQALSML
RSHIENGPNHSQTRFARLLMLLVNLRVGIGSKVEKTFFEKIIGSAKMEKL
LCDMFQS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001723Nuclear_hrmn_rcpt
IPR001628Znf_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
IPR035500NHR_like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003707steroid hormone receptor activity
GO:0008270zinc ion binding
GO:0003700DNA-binding transcription factor activity
GO:0043565sequence-specific DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
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