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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR001723 | Nuclear hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 225..235 score: 44.85 coord: 276..297 score: 26.14 coord: 417..434 score: 30.57 coord: 360..375 score: 30.5 coord: 297..313 score: 45.57 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 122..130 score: 64.76 coord: 130..138 score: 59.35 coord: 88..103 score: 49.85 coord: 72..88 score: 53.11 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | c4gold | coord: 160..232 e-value: 2.0E-36 score: 137.0 coord: 69..141 e-value: 2.0E-36 score: 137.0 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 162..231 e-value: 6.2E-28 score: 97.0 coord: 71..140 e-value: 6.2E-28 score: 97.0 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 72..98 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 163..189 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 69..145 score: 19.07 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 160..236 score: 19.815 |
IPR000536 | Nuclear hormone receptor, ligand-binding domain | SMART | SM00430 | holi | coord: 275..429 e-value: 3.9E-27 score: 106.1 |
IPR000536 | Nuclear hormone receptor, ligand-binding domain | PFAM | PF00104 | Hormone_recep | coord: 274..440 e-value: 1.9E-21 score: 76.5 |
IPR000536 | Nuclear hormone receptor, ligand-binding domain | PROSITE | PS51843 | NR_LBD | coord: 243..457 score: 37.051 |
None | No IPR available | GENE3D | 1.10.565.10 | | coord: 243..457 e-value: 5.1E-59 score: 201.3 |
None | No IPR available | PANTHER | PTHR24083 | NUCLEAR HORMONE RECEPTOR | coord: 62..141 coord: 160..252 |
None | No IPR available | PANTHER | PTHR24083 | NUCLEAR HORMONE RECEPTOR | coord: 270..456 |
None | No IPR available | PANTHER | PTHR24083:SF4 | PHOTORECEPTOR-SPECIFIC NUCLEAR RECEPTOR | coord: 62..141 |
None | No IPR available | PANTHER | PTHR24083:SF4 | PHOTORECEPTOR-SPECIFIC NUCLEAR RECEPTOR | coord: 270..456 |
None | No IPR available | PANTHER | PTHR24083:SF4 | PHOTORECEPTOR-SPECIFIC NUCLEAR RECEPTOR | coord: 160..252 |
None | No IPR available | CDD | cd06970 | NR_DBD_PNR | coord: 161..246 e-value: 4.20105E-57 score: 181.679 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 70..146 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 161..245 |
IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 154..242 e-value: 2.9E-31 score: 109.3 coord: 63..150 e-value: 4.5E-29 score: 102.3 |
IPR035500 | Nuclear hormone receptor-like domain superfamily | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 230..456 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk11517 ID=Tk11517|Name=Tk11517|organism=Tigriopus kingsejongensis|type=polypeptide|length=457bp METWRAFHSCSLEERPREGSLALQRHYEVDQQDGGSWSCLTASSLRSQHP VFSADIKDLSGNGSDCSGNLLCIVCGDVSSGKHYGILACNGCSGFFKRSV RRRLIYRCQAGTGTCIIDKAHRNQCQACRLKKCLNMGMNKDVFSADIKDL SGNGSDCSGNLLCIVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQ AGTGTCIIDKAHRNQCQACRLKKCLNMGMNKDAVQNERQPRNTATVKPES LPSMESDKIMRETVGAFGPPENNHEICARLLFMAVKWTKNLTSFVSLPFR DQVTLLEESWSELFLLCAIQWCLPLEKPSLFSLTDFEVVSTDTSDLLHHL SLMFGRFKAMGVNPAEFACMKAVLLFKPETVGLKDTTQVENLQDQALSML RSHIENGPNHSQTRFARLLMLLVNLRVGIGSKVEKTFFEKIIGSAKMEKL LCDMFQS back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
Term | Definition |
GO:0005634 | nucleus |
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
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