Tk11858, Tk11858 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk11858
Unique NameTk11858
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length480
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 1..32
e-value: 2.2
score: 14.8
coord: 269..308
e-value: 19.0
score: 9.0
coord: 227..266
e-value: 140.0
score: 3.5
coord: 168..212
e-value: 8.3
score: 11.2
coord: 35..74
e-value: 6.6E-7
score: 39.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 10..32
e-value: 0.093
score: 13.5
coord: 40..74
e-value: 3.1E-4
score: 21.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 42..83
score: 15.12
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 6..311
e-value: 2.9E-42
score: 146.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 421..435
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 401..480
NoneNo IPR availableSUPERFAMILY117289Nucleoporin domaincoord: 9..329
IPR037850Retinoblastoma-binding protein 5/Swd1PANTHERPTHR44040FAMILY NOT NAMEDcoord: 2..433
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 61..75
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 11..83
score: 17.482

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
snap_masked-scaffold180_size281610-processed-gene-0.7-mRNA-1snap_masked-scaffold180_size281610-processed-gene-0.7-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk11858 ID=Tk11858|Name=Tk11858|organism=Tigriopus kingsejongensis|type=polypeptide|length=480bp
LDCITMALTCAFNRFGTLLAVGCNDGRVVIWDFLTRGIAKILSAHVHPVC
SISWSRSGRQMVSASTDNAVSVWDVLSGECVHKFRFPSPVLKVQFHPRRE
AQILICPMKHAPVVVDLGDESHVVVPSSAPEDESDAQVVAAYDQRGDHIY
TGNAKGRVTVVASPADHDMKVVTQFKVSQQVSSTTAIKSIEFSRKGKSFL
VNTADRVIRVYQTSEVLLYRDGKDPEADQKLQDLVNKTMWKKCCFSGDGE
YVCAGSARQHALYIWEKATGTLMKILHGLKGEMLHDVVWHPVRSIVASIS
QGVVTVWAQQQVENWSAFAPDFKELDENVDYEERESEFDLEDEDKSVQMN
EEEKDDDIEVDVANNAPIPAFCSSDEDEDDLNSLLYLPIAPEIEEPEEHF
VPGVDAPAPEGIADRGATSDSKDATQAKKKRPKTTEINLPNAPKDEVHPM
MAKSSAREKSSAAAKRSSAGRPKAKDKKSK
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR037850RBBP5/Swd1
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0048188Set1C/COMPASS complex
Add to Basket