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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | PRINTS | PR01705 | TSP1REPEAT | coord: 348..359
score: 45.24
coord: 327..340
score: 43.81
coord: 367..378
score: 34.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 23..309 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 89..103 |
| None | No IPR available | PANTHER | PTHR43896 | FAMILY NOT NAMED | coord: 147..271
coord: 207..317
coord: 89..214
coord: 30..163 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | SMART | SM00209 | TSP1_2 | coord: 449..503
e-value: 0.061
score: 20.1
coord: 329..383
e-value: 3.1E-9
score: 46.7
coord: 388..444
e-value: 1.4E-9
score: 47.8 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | PFAM | PF00090 | TSP_1 | coord: 330..381
e-value: 4.2E-9
score: 36.4
coord: 390..439
e-value: 2.0E-5
score: 24.6
coord: 465..499
e-value: 0.017
score: 15.2 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | PROSITE | PS50092 | TSP1 | coord: 326..383
score: 12.204 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | PROSITE | PS50092 | TSP1 | coord: 446..503
score: 8.963 |
| IPR000884 | Thrombospondin type-1 (TSP1) repeat | PROSITE | PS50092 | TSP1 | coord: 385..444
score: 11.479 |
| IPR008160 | Collagen triple helix repeat | PFAM | PF01391 | Collagen | coord: 41..98
e-value: 2.1E-9
score: 36.9
coord: 209..266
e-value: 8.3E-8
score: 31.8 |
| IPR036383 | Thrombospondin type-1 (TSP1) repeat superfamily | GENE3D | 2.20.100.10 | | coord: 383..443
e-value: 8.2E-13
score: 50.5
coord: 325..382
e-value: 1.5E-14
score: 56.0 |
| IPR036383 | Thrombospondin type-1 (TSP1) repeat superfamily | GENE3D | 2.20.100.10 | | coord: 445..502
e-value: 3.2E-10
score: 42.1 |
| IPR036383 | Thrombospondin type-1 (TSP1) repeat superfamily | SUPERFAMILY | 82895 | TSP-1 type 1 repeat | coord: 443..499 |
| IPR036383 | Thrombospondin type-1 (TSP1) repeat superfamily | SUPERFAMILY | 82895 | TSP-1 type 1 repeat | coord: 325..380 |
| IPR036383 | Thrombospondin type-1 (TSP1) repeat superfamily | SUPERFAMILY | 82895 | TSP-1 type 1 repeat | coord: 381..441 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk11952 ID=Tk11952|Name=Tk11952|organism=Tigriopus kingsejongensis|type=polypeptide|length=740bp
LSRLVAIIVVEEREKLFLESEERQGRKVEQVASQCACPSSPAGYPGPRGP
AGVNGWEGEPGQHGIPGSDGNFGPPGTPGALGTPGTNGVPGSPGPPGPPG
LPGQAGTPGSHGVAGTAGSFGTRGPSGTPGSAGGSGLSGPVGQSGLAGPN
GRNGIPGSSGPNGPVGPAGPAGTSGSVGTPGNPGSGGPSGGFGAPGQAGV
AGVPGVPGTGGTMGASGSQGQNGPDGHDGKAGQDGSAGQAGVPGPQGATG
VPGSPGPLGTAGTAGQAAQNGIGGLPGQPGRNGDDGGKGPNGPPGTPGTP
GAQGLNGVPGFPGFPGNLVVLPNKVDGVWSGWGLWSECQFDADDCGNGMQ
ERTRACNDPPPSHGGDSCAGDGVESQMCNVPCPINGGLADWSEWSSCVHN
TGTCGLGLETRTRTCTNPSPDFGGMSCPDADPNSESRTCFTDCPVDGGFG
EYGDFGACIPRAFGCGDGTKTQSRLCDNPVPQFEGAECMGAFTQSDDCVE
TCTGTTQFKLLKPTNAAGISANGVTVTVTDKNAGSGFEMEFTADPTGVIE
LMHSGLQTVLVKVEKDGISPYTVELTLDPSGGMFLLPVIEMLNAGETAVT
LTWTEKIMDMNMDSFQNDCMCKIGFDMDPNCMQGTTTISREKGGGGASTV
GGETEYIKYSGPFDPALTHTIVVDMTIGNTADFALSMATVFVIRDGMGSL
YAIPPNPDSETIWKVGILTPADGSFVPESTSPYIDAKPCP back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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