Tk12496, Tk12496 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk12496
Unique NameTk12496
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length379
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002126CadherinPRINTSPR00205CADHERINcoord: 49..68
score: 34.49
coord: 133..159
score: 21.17
coord: 68..81
score: 40.1
coord: 174..191
score: 35.01
IPR002126CadherinSMARTSM00112CA_2coord: 225..331
e-value: 0.73
score: 5.2
coord: 100..190
e-value: 6.7E-11
score: 52.2
NoneNo IPR availableGENE3D2.60.40.60coord: 69..189
e-value: 3.2E-13
score: 52.1
NoneNo IPR availableGENE3D2.60.40.60coord: 7..68
e-value: 5.2E-5
score: 25.4
NoneNo IPR availableGENE3D2.60.40.60coord: 217..338
e-value: 5.3E-7
score: 32.1
NoneNo IPR availablePANTHERPTHR43956FAMILY NOT NAMEDcoord: 273..346
coord: 26..337
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 27..70
score: 8.665
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 289..333
score: 11.624
NoneNo IPR availablePROSITEPS50268CADHERIN_2coord: 71..192
score: 16.031
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 74..187
e-value: 7.64601E-9
score: 50.3898
NoneNo IPR availableCDDcd11304Cadherin_repeatcoord: 274..328
e-value: 0.00165124
score: 35.367
IPR020894Cadherin conserved sitePROSITEPS00232CADHERIN_1coord: 58..68
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 185..325
IPR015919Cadherin-likeSUPERFAMILY49313Cadherin-likecoord: 64..192

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold221_size251850-snap-gene-0.12-mRNA-1maker-scaffold221_size251850-snap-gene-0.12-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk12496 ID=Tk12496|Name=Tk12496|organism=Tigriopus kingsejongensis|type=polypeptide|length=379bp
LNTLSYTKTGVQSLVLLIRVSGGTYWDYETIKDISFDLVVTPSGSTNEAD
EVVQNFNITLTDVNDNEPHFTKDEYLVKVREDLDGLKPSEDGVFTLFDGI
KALDSDASDSFGNKSIRYEMSSSIPLTIDPLTGVVTFTATNIFDYELRKS
FEISISVRDSITEDGTSLPGSLFGSSVLKIQVIDVNDEPPVFTSQPDQTF
CLYENETSMWLQDLCNGQDPRDFLFEANDQDLNPALKLEIDRNFTVARKD
NRVVNLKDYDYLAFINLVPQSSNINSISGVLKLAEDTWIDREKVDQLSLV
INVVDENTETGSRFSRSTMVIDIIDLDDSKPEFVNSESWKFEINEIEDGA
DFTPDEQVLIQRILVSDNDLSQEFTFSIE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002126Cadherin
IPR020894Cadherin_CS
IPR015919Cadherin-like
Vocabulary: Biological Process
TermDefinition
GO:0007156homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007155cell adhesion
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005886plasma membrane
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