Tk12527, Tk12527 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk12527
Unique NameTk12527
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length771
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainSMARTSM00918Lig_chan_Glu_bd_2coord: 208..270
e-value: 3.0E-6
score: 36.8
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainPFAMPF10613Lig_chan-Glu_bdcoord: 199..307
e-value: 2.2E-13
score: 50.3
NoneNo IPR availableGENE3D3.40.190.10coord: 300..309
e-value: 1.1E-60
score: 207.3
coord: 419..519
e-value: 1.1E-60
score: 207.3
NoneNo IPR availableGENE3D1.10.287.70coord: 567..595
e-value: 1.1E-60
score: 207.3
coord: 310..418
e-value: 1.1E-60
score: 207.3
NoneNo IPR availableGENE3D3.40.190.10coord: 221..299
e-value: 1.1E-60
score: 207.3
coord: 520..559
e-value: 1.1E-60
score: 207.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 733..754
NoneNo IPR availablePANTHERPTHR18966IONOTROPIC GLUTAMATE RECEPTORcoord: 166..600
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 358..377
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..324
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 325..346
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 389..414
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 378..388
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 347..357
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 595..771
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 574..594
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..22
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 415..573
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.825
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 200..308
coord: 417..555
NoneNo IPR availableTMHMMTMhelixcoord: 325..347
NoneNo IPR availableTMHMMTMhelixcoord: 389..411
NoneNo IPR availableTMHMMTMhelixcoord: 360..379
NoneNo IPR availableTMHMMTMhelixcoord: 569..591

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold455_size166772-snap-gene-0.36-mRNA-1maker-scaffold455_size166772-snap-gene-0.36-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk12527 ID=Tk12527|Name=Tk12527|organism=Tigriopus kingsejongensis|type=polypeptide|length=771bp
MRGQAPIILPLILCFFTVEVWGDLPLAPFIHDFCRRHSIRYFSLVSGCVS
PKDQIHTVKQLMAGPQSTSSLYLARFLPNIHPNSLAKTLNIALKNSTFSI
KGDLDQRMRFKLAQDFWLVQLDGNEEMADLLQDLPLDLDDEFYVFSMTTT
DQIVVYEAYKLQAAMKPRVLYFGTWTVEGFIVSNSDKWDRRGDLRGLSFR
ISAASSIPYTKVDEQSDGQVELSGMYPDIFFSLKSMLNFTFTIILPEERE
EWGTKNPDGSWTGVIGQIQRKEIDFSPISFTRTKLRSEVVDFALPIAQFH
HRFFVQNPKNSFNWLAYLEPLTLRVWLTIFLLTLILPPFLTFLAFMPWTR
KESERSEFTLWKSFIFVLGALTLARGWSVTPIRARNRVIFLAIILGGSVV
FWHWEAMIISYLAVRVPALPFQDLEGLLSKTNKKILVKPGSSYVDGFRYS
LDPLIQEAWQSRIKDYLDTYPNSRRDLTDLVASDPDYVLYDNFYSSRTFD
AYRRCKIIAVPKVYEKKVFAYAFQRDSPFLPLFNFNLKRMLERGSMNQVV
EKYLSVAGQQCEDLSGAPLGFENCFTAFLVFLTGCFLGAVVGMAEHLAKC
FGPKGTEVLNRDYYDRLSQSDLVQIVRQRDEALERLLNVVHEDSDPTQGP
NIVRYLVETARNTTLTLPRTNPLASCCRDHRDPIHHDVEVLEVCAPDFSP
KLCLGGIHDVLIARRKPSKTLCPLIQEIFNGGQGYDDGYDDDDEEEEDGG
GGNVHGLRCSSVRSELVFELC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019594Glu/Gly-bd
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
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