Tk12535, Tk12535 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk12535
Unique NameTk12535
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length552
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 182..202
NoneNo IPR availableCOILSCoilCoilcoord: 136..163
NoneNo IPR availableGENE3D1.10.260.40coord: 342..412
e-value: 7.3E-40
score: 136.7
NoneNo IPR availableGENE3D1.10.10.60coord: 439..486
e-value: 2.3E-21
score: 77.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..71
NoneNo IPR availablePANTHERPTHR11636POU DOMAINcoord: 48..500
NoneNo IPR availablePANTHERPTHR11636:SF76POU DOMAIN PROTEIN 2, ISOFORM B-RELATEDcoord: 48..500
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 525..545
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 546..552
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..524
IPR013847POU domainPRINTSPR00028POUDOMAINcoord: 357..374
score: 69.68
coord: 380..393
score: 82.59
coord: 435..455
score: 54.07
coord: 396..411
score: 73.63
coord: 470..485
score: 66.21
IPR000327POU-specific domainSMARTSM00352poucoord: 338..412
e-value: 3.4E-52
score: 189.4
IPR000327POU-specific domainPFAMPF00157Poucoord: 342..412
e-value: 1.6E-38
score: 130.4
IPR000327POU-specific domainPROSITEPS00465POU_2coord: 380..393
IPR000327POU-specific domainPROSITEPS00035POU_1coord: 356..368
IPR000327POU-specific domainPROSITEPS51179POU_3coord: 338..412
score: 56.123
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 436..498
e-value: 3.7E-17
score: 73.0
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 437..493
e-value: 8.9E-16
score: 57.4
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 434..494
score: 16.633
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 437..493
e-value: 4.76545E-16
score: 70.35
IPR001387Cro/C1-type helix-turn-helix domainCDDcd00093HTH_XREcoord: 350..400
e-value: 0.00747773
score: 32.9102
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 432..498
IPR010982Lambda repressor-like, DNA-binding domain superfamilySUPERFAMILY47413lambda repressor-like DNA-binding domainscoord: 338..412

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold262_size232883-snap-gene-0.12-mRNA-1maker-scaffold262_size232883-snap-gene-0.12-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk12535 ID=Tk12535|Name=Tk12535|organism=Tigriopus kingsejongensis|type=polypeptide|length=552bp
MVEDGDTLAKPHSSHNHHNHHHRHLVEPDDDSNEEALNLAARSSSSPPSH
EGRSSPGDFLKSQNGSPTTTALSSIQSALAALQAGQMSLNQLQALGTQNM
IQNQIAAAVASQGNPLSFSLTSHAGLGVNSIGTNEIQALQMALQQQQQNL
QQQLQNFLFLQQQQMKAGISASMSTQTVGSLLQAQSQQVAQTTAQLRRLQ
RQQQKEIFNQRMQSSPGLMGHQGTMTIETPKAKDLLLQRKKAKMGHGGVG
GLVMTTASGGSMGHNPIVSLALSSLTPIPLPSTPRCSTNNNPSLYLDTPL
SRPLSIATTTSETSISPNLPSPPMSFAPAGQRLDLPADENVDLEELEQFA
KEFKQRRIKLGYTQGDVGLAMGKMYGNDFSQTTISRFEALNLSFKNMCKL
KPLLEKWLDDADAQINGTAPLSLTTTQPCTDLMGKRRKKRTSIESNIRIA
LERAFLKNPKPTSEEIRHVGNTLSMEKEVVRVWFCNRRQKEKRINPAALS
PTGGGDQAHYMASLSSLPTSMASQFHPSLANLVGAAAAAAAGNLLRPKRE
HS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013847POU
IPR000327POU_dom
IPR001356Homeobox_dom
IPR001387Cro/C1-type_HTH
IPR009057Homeobox-like_sf
IPR010982Lambda_DNA-bd_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
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