Tk12537, Tk12537 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk12537
Unique NameTk12537
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length951
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 500..520
NoneNo IPR availableCOILSCoilCoilcoord: 353..380
NoneNo IPR availableGENE3D1.10.10.60coord: 692..758
e-value: 9.1E-23
score: 81.8
NoneNo IPR availableGENE3D1.10.260.40coord: 616..686
e-value: 9.8E-40
score: 136.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 895..916
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 898..916
NoneNo IPR availablePANTHERPTHR11636POU DOMAINcoord: 291..827
NoneNo IPR availablePANTHERPTHR11636:SF76POU DOMAIN PROTEIN 2, ISOFORM B-RELATEDcoord: 291..827
IPR013847POU domainPRINTSPR00028POUDOMAINcoord: 631..648
score: 69.68
coord: 742..757
score: 77.47
coord: 707..727
score: 58.98
coord: 670..685
score: 76.43
coord: 654..667
score: 82.59
IPR000327POU-specific domainSMARTSM00352poucoord: 612..686
e-value: 3.2E-52
score: 189.5
IPR000327POU-specific domainPFAMPF00157Poucoord: 616..686
e-value: 3.1E-38
score: 129.5
IPR000327POU-specific domainPROSITEPS00465POU_2coord: 654..667
IPR000327POU-specific domainPROSITEPS00035POU_1coord: 630..642
IPR000327POU-specific domainPROSITEPS51179POU_3coord: 612..686
score: 56.575
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 708..770
e-value: 6.2E-18
score: 75.6
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 709..765
e-value: 9.5E-17
score: 60.5
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 706..766
score: 16.86
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 709..765
e-value: 2.03081E-16
score: 71.8908
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 741..764
IPR001387Cro/C1-type helix-turn-helix domainCDDcd00093HTH_XREcoord: 624..674
e-value: 0.00844052
score: 33.2954
IPR010982Lambda repressor-like, DNA-binding domain superfamilySUPERFAMILY47413lambda repressor-like DNA-binding domainscoord: 613..686
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 703..767

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold262_size232883-snap-gene-0.14-mRNA-1maker-scaffold262_size232883-snap-gene-0.14-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk12537 ID=Tk12537|Name=Tk12537|organism=Tigriopus kingsejongensis|type=polypeptide|length=951bp
MCVLRPPVASLSNVDSQMFFKTLSINNVGSFSIFRNRLDLRAGWRGSWYT
QVNTLRAPVRFVLGLKVDGAKSMDEPSMGNQPGGQDGDGQSHQPRGGGSG
QASSLQSEHLLDSTNMAPFAKTSLNKREHNKEGLERQRQVGGEDERHPDP
SELEDEQPKHKRSKESHSSPPPHHATPTSLFDPKVSGRYMGAGGLSDNLS
GFPFFGPKSGLAPSSSASSLLKDLNDKDRLLNLITSGGAALAAMSELNKG
PREDSPMSDHHGQTKSPGEDKSVSGASPNAMASVQAALAALQAGQMSLNQ
LSVQLLALGVQSPGLFQTQLAAAAARQLSQQPTGGSNPSGLAPNLLLPPS
NEFQAIQQALQQQQQNIQQHLQNLLMLQQSANHMNNASSANNGANLMSSP
VRLPSEMANYSKASDLASMYNLQGLPGLFGVKPNNLPSSMANLSDLLPSP
SKSGRSLSNRPIPTPPPSLPPLSMPPGLPNTPVSGGQSPFASLLGSSSPQ
AQFQHAMAQAANQLQQIQKKHAQHSKGLGGPSPGSMMGLGLPGERGRIGN
GSLLTSAGETRTQPTKAQLTMPSVLQQQSRFNSNPGGKSGPLGLNGQNPF
SSQPPRLELPPEESTDLEELEQFAKMFKQKRIKLGYTQGDVGLAMGKMYG
NDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDADSSLNTSSLFCNSLS
TADSMGRRRKKRTSIETTVRIALERAFGQNPKPTSEEITYVADSLNMEKE
VVRVWFCNRRQKEKRINPPGTGSGPPSPASPPPFGPSPAPMNGGGSSFFV
TPPRSSATPPNSMTPFSGSPASPRVSPNSLGFPTTSLPMSSASFPHFMSA
SPASFSNSGILSPTSTTSNPAHSSGLLTSLPNIPKYEPRFEPKFEPNLSA
RSSHSPMKSDLVSPPTSTTPTLVIMDFTPMTMGKGDRPHLVVFFFLLLSH
F
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013847POU
IPR000327POU_dom
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR001387Cro/C1-type_HTH
IPR010982Lambda_DNA-bd_dom_sf
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
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