EMLSAG00000000237, EMLSAG00000000237-683003 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000237
Unique NameEMLSAG00000000237-683003
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000237 vs. C. finmarchicus
Match: gi|592788626|gb|GAXK01165942.1| (TSA: Calanus finmarchicus comp1432_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.038e+0
Identity = 15/55 (27.27%), Postives = 29/55 (52.73%), Query Frame = 0 
Query:    3 IWKGNQWIHRE-----LYYTNGVFIALVFYSIYYGVTVDTTHMYIPASLSIGSDI 52
            +WK N+    E     ++Y N +F+ALV  + +Y ++  + HM    S+ + S +
Sbjct:  150 LWKKNEVAEYEATTFSIFYNNSLFLALVIIASFYILSGTSPHMNYALSIGLSSGL 314
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BLAST of EMLSAG00000000237 vs. L. salmonis peptides
Match: EMLSAP00000000237 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1031:194142:195865:-1 gene:EMLSAG00000000237 transcript:EMLSAT00000000237 description:"snap-LSalAtl2s1031-processed-gene-1.65")

HSP 1 Score: 152.14 bits (383), Expect = 2.103e-49
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 
Query:    1 MAIWKGNQWIHRELYYTNGVFIALVFYSIYYGVTVDTTHMYIPASLSIGSDIFCEQFWNPGDAPAISYFIIFV 73
            MAIWKGNQWIHRELYYTNGVFIALVFYSIYYGVTVDTTHMYIPASLSIGSDIFCEQFWNPGDAPAISYFIIFV
Sbjct:    1 MAIWKGNQWIHRELYYTNGVFIALVFYSIYYGVTVDTTHMYIPASLSIGSDIFCEQFWNPGDAPAISYFIIFV 73
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000237 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000237 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592788626|gb|GAXK01165942.1|3.038e+027.27TSA: Calanus finmarchicus comp1432_c0_seq1 transcr... [more]
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BLAST of EMLSAG00000000237 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000002372.103e-49100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1031:1941... [more]
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BLAST of EMLSAG00000000237 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000237 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000237 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000237 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1031supercontigLSalAtl2s1031:194142..195865 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s1031-processed-gene-1.65
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000237 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000237EMLSAT00000000237-696084Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1031:194142..195865-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000237-683003 ID=EMLSAG00000000237-683003|Name=EMLSAG00000000237|organism=Lepeophtheirus salmonis|type=gene|length=1724bp|location=Sequence derived from alignment at LSalAtl2s1031:194142..195865- (Lepeophtheirus salmonis)
ATGGCTATTTGGAAGGGAAATCAATGGATACATCGGGAATTGTATTATAC
TAATGGAGTTTTTATTGCATTAGTATTTTATTCCATTTATTATGGTGTGA
CAGTAGATACGACTCACATGTACATTCCAGCTTCACTTTCAATAGGATCA
GGTAAGATATTAAATTCTCACACAGGGGCGTCCGCAGGATTATATATATA
TTCTTTCTTTTTTTTGGCTTTACATTTATTGAAAACAAAAAATTCAAAAA
TTCAATATTCAATATTTTGAAAAAAGTTTCAAAAATCTATTGCTATTAGC
AGAAAATTAAATTTTTTGGACAAAAAATTCATATTTATTCACAGAAAATT
ACATTTTTTGGACAAAAAAATTCATATTTATTCACAGAAAATTAAATTTT
TTATAAATATATTCAAAAATAATGTTTCAAATATTGAATATTTTGAAAGA
AAAAAATCAAAAATAGATAGCTTATCACAGAAATTTTAATTTATTAAAAA
ATTAGTCAAAAATTAAATGTCAAAGTTTAAATTTTTTGGTGAAAAATTTC
AAAAATCCATAGCCATTCAAAGCAAATTTAATTTATGGAAAATTTTTTTG
AATTTTTCCTATATTGATTACTTTGCCCGAATGAAGAAAGAAATTAGTAT
TAAATTAAAAACCTCACCACCAGTCCACACCCTGCATACGCCCCTATCTC
TAATGTACTTAGATGAGTCATTAAACTCATCTCATTAATATAGTATATTG
TATTTTGAGGGCCTCCTTTACTTCTAAATTTATGGATCCAATCAAAAATA
AAAGAAGAGAGAATAAACAAATAGATATTTAATCGATACTCAAGAATTAT
TCTAAGAAAACGATAAAGAATAACATCTATGCACAATGTGGCGTTACTTT
GCTTATACAAAAATACACTGTGGATTTTGCTGTGAGCTGTCTCAGACGTC
TTTCTCTCACGATATATACGTCATGGCTATTTCATAGTCTATTCTTTTTG
ATAAATAAACAGGGGCCTCCAAAGAAGGAGGGATGGAAGAGAAGTAGCCT
CCCAAATTTAAAAAAAAATCTTACAAAAAAATTTCATAATTTACATTTCA
TTAAAATTTMGAAAAAAAATTATATTTCAAAATTTAATTTTAGAAATTTT
TTCCAAAAAATTTCATTTTTTGTGCACAGCTGTCGATTTTCGAATTTCTT
TTTCCAAAAAAATTAATATTTGAAATTAATTTTCGTGGNCTGTCAATAGC
TATGGATTTTTGAAATTTTTCMSKGAAAAATTTAATAATTGACATTATTT
TCGAAAAAAAATTTATAATATAAATTAAATTTAGACATTTTTTGTGAACA
GTTCTGGGTTTTTGAATTTTCTTTCCAGAAAATTAAATTGTTTGTAAATA
GCTATGACTTTTTTGAAATGAAAAATTCGGTTTCTTGTGAATAGTTGTGG
ATTTTTGGTTTTTTTTTTTTAAACTAATATTTGAAATTTAATTAAATTTT
TAATTAATTTGTGAATAGCTATGGATTTTTGAAAATTATTTTCGCAAAAA
TTAATTGTGTGTGAATATCTATGAATTTTTTAAATTTTTTTCAAAAAAAT
TTTATATTTGAAATTAAATTTAAAAATTATTTTTTTTGTGAACAGTTCTT
CATTTTTAAAATTTTAATATATATAGAATCCTGGGGACGCCCCTGCTATT
TCATATTTTATTATTTTTGTTTAA
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