EMLSAG00000000491, EMLSAG00000000491-683257 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000491
Unique NameEMLSAG00000000491-683257
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000491 vs. C. finmarchicus
Match: gi|592870439|gb|GAXK01087123.1| (TSA: Calanus finmarchicus comp217164_c8_seq7 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 5.621e-1
Identity = 22/65 (33.85%), Postives = 30/65 (46.15%), Query Frame = 0 
Query:    2 NCSPKDLQ--EWQRKSIFLKAGPARKWKHSFQKRNESGNAQDILRILEGEVSDEIKADISDIVRS 64
            N S KDLQ   +   SIF    P+     S   R  S + +DI  ILE   S+     +SD++ S
Sbjct: 1536 NSSCKDLQYLSFSFSSIFWPEDPSIILDSSIFTRASSADKEDISAILESTTSEISPTFLSDVIFS 1730
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BLAST of EMLSAG00000000491 vs. C. finmarchicus
Match: gi|592928105|gb|GAXK01030382.1| (TSA: Calanus finmarchicus comp1279691_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 7.912e-1
Identity = 19/48 (39.58%), Postives = 26/48 (54.17%), Query Frame = 0 
Query:   10 EWQRKSIF-----LKAGPARKWKHSFQKRNESGNAQDILRILEGEVSD 52
            EW+ K +F     LK G A  W+++     ES NA  +L IL G +SD
Sbjct: 1299 EWR*KMLFIPANNLKEGNAFIWQNAKNDFAESANASPVLFILCGNISD 1442
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BLAST of EMLSAG00000000491 vs. C. finmarchicus
Match: gi|592754144|gb|GAXK01200269.1| (TSA: Calanus finmarchicus comp306279_c1_seq42 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.835e+0
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 0 
Query:   38 NAQDILRILEGEVSDEIKADISDI 61
            N  D+++I+ G V DEI ADI +I
Sbjct:  125 NQTDVVKIILGRVPDEIMADIFNI 196
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BLAST of EMLSAG00000000491 vs. C. finmarchicus
Match: gi|592754164|gb|GAXK01200249.1| (TSA: Calanus finmarchicus comp306279_c1_seq22 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.003e+0
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 0 
Query:   38 NAQDILRILEGEVSDEIKADISDI 61
            N  D+++I+ G V DEI ADI +I
Sbjct:  125 NQTDVVKIILGRVPDEIMADIFNI 196
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BLAST of EMLSAG00000000491 vs. C. finmarchicus
Match: gi|592771942|gb|GAXK01182626.1| (TSA: Calanus finmarchicus comp2627688_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 7.483e+0
Identity = 9/24 (37.50%), Postives = 19/24 (79.17%), Query Frame = 0 
Query:   22 PARKWKHSFQKRNESGNAQDILRI 45
            P++K K +F+ +NE+GN ++ L++
Sbjct:   36 PSQKRKSNFRNKNENGNTRNHLQV 107
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BLAST of EMLSAG00000000491 vs. L. salmonis peptides
Match: EMLSAP00000000491 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1076:148302:148721:1 gene:EMLSAG00000000491 transcript:EMLSAT00000000491 description:"maker-LSalAtl2s1076-snap-gene-1.3")

HSP 1 Score: 134.035 bits (336), Expect = 1.521e-42
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 
Query:    1 MNCSPKDLQEWQRKSIFLKAGPARKWKHSFQKRNESGNAQDILRILEGEVSDEIKADISDIVRSW 65
            MNCSPKDLQEWQRKSIFLKAGPARKWKHSFQKRNESGNAQDILRILEGEVSDEIKADISDIVRSW
Sbjct:    1 MNCSPKDLQEWQRKSIFLKAGPARKWKHSFQKRNESGNAQDILRILEGEVSDEIKADISDIVRSW 65
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000491 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000491 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592870439|gb|GAXK01087123.1|5.621e-133.85TSA: Calanus finmarchicus comp217164_c8_seq7 trans... [more]
gi|592928105|gb|GAXK01030382.1|7.912e-139.58TSA: Calanus finmarchicus comp1279691_c0_seq1 tran... [more]
gi|592754144|gb|GAXK01200269.1|2.835e+050.00TSA: Calanus finmarchicus comp306279_c1_seq42 tran... [more]
gi|592754164|gb|GAXK01200249.1|3.003e+050.00TSA: Calanus finmarchicus comp306279_c1_seq22 tran... [more]
gi|592771942|gb|GAXK01182626.1|7.483e+037.50TSA: Calanus finmarchicus comp2627688_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000491 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000004911.521e-42100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1076:1483... [more]
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BLAST of EMLSAG00000000491 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000491 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000491 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000491 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1076supercontigLSalAtl2s1076:148302..148721 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1076-snap-gene-1.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000491 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000491EMLSAT00000000491-696338Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1076:148302..148721+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000491-683257 ID=EMLSAG00000000491-683257|Name=EMLSAG00000000491|organism=Lepeophtheirus salmonis|type=gene|length=420bp|location=Sequence derived from alignment at LSalAtl2s1076:148302..148721+ (Lepeophtheirus salmonis)
ATGAATTGTTCACCTAAGGATTTACAAGAATGGCAGAGGAAATCCATTTT
TCTAAAGTAGATGTAGGAGCTTCCGGGACGTTCCCATACAGTGTTACACA
CTTTGTAAAAATAGTTTTGTGATGATAAAGAGCCGGTCCTGCTAGAAAGT
GGAAGCATTCCTTTCAAAAGCGAGTAATTACGCACATAAGAAAGTGCACT
TGGTAGTACTGGAGATATTTTCCTAATAGATTACGAGGACATTTTAACCC
ATGGATGTTCCCAGTGTGAAATGCAAGGATTAAAAGCTACTGCATATCAA
TGATGTCTTTCTCTGCCCAAGAATGAGTCTGGAAACGCACAGGATATCCT
GCGTATTCTAGAGGGAGAGGTCAGTGATGAGATCAAAGCGGATATCTCTG
ATATCGTTAGGAGTTGGTGA
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