EMLSAG00000001063, EMLSAG00000001063-683829 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001063
Unique NameEMLSAG00000001063-683829
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001063 vs. C. finmarchicus
Match: gi|592955131|gb|GAXK01003422.1| (TSA: Calanus finmarchicus comp186723_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 1.021e-2
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 0 
Query:   62 IAKNINKDSYGLVFGINTFFTL 83
            IA NI ++SYGLVFG NTF  L
Sbjct:  245 IASNITQNSYGLVFGFNTFLAL 310
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BLAST of EMLSAG00000001063 vs. C. finmarchicus
Match: gi|592822451|gb|GAXK01132117.1| (TSA: Calanus finmarchicus comp251673_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 2.946e+0
Identity = 17/45 (37.78%), Postives = 28/45 (62.22%), Query Frame = 0 
Query:   26 VILWGVSYSLLFSFEHFM--TYSDG---AYRSYLDSLCRILIAKN 65
            VIL G+  S++FSF HF+  +YSDG      +  +++C+I   +N
Sbjct: 1195 VILMGIG-SIIFSFPHFLSESYSDGPLFGQNATDENICKISYHQN 1326
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BLAST of EMLSAG00000001063 vs. C. finmarchicus
Match: gi|592822452|gb|GAXK01132116.1| (TSA: Calanus finmarchicus comp251673_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 2.961e+0
Identity = 17/45 (37.78%), Postives = 28/45 (62.22%), Query Frame = 0 
Query:   26 VILWGVSYSLLFSFEHFM--TYSDG---AYRSYLDSLCRILIAKN 65
            VIL G+  S++FSF HF+  +YSDG      +  +++C+I   +N
Sbjct: 1195 VILMGIG-SIIFSFPHFLSESYSDGPLFGQNATDENICKISYHQN 1326
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BLAST of EMLSAG00000001063 vs. C. finmarchicus
Match: gi|592822453|gb|GAXK01132115.1| (TSA: Calanus finmarchicus comp251673_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 2.961e+0
Identity = 17/45 (37.78%), Postives = 28/45 (62.22%), Query Frame = 0 
Query:   26 VILWGVSYSLLFSFEHFM--TYSDG---AYRSYLDSLCRILIAKN 65
            VIL G+  S++FSF HF+  +YSDG      +  +++C+I   +N
Sbjct: 1195 VILMGIG-SIIFSFPHFLSESYSDGPLFGQNATDENICKISYHQN 1326
[Close]
BLAST of EMLSAG00000001063 vs. C. finmarchicus
Match: gi|592807508|gb|GAXK01147060.1| (TSA: Calanus finmarchicus comp2301614_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 7.609e+0
Identity = 20/73 (27.40%), Postives = 31/73 (42.47%), Query Frame = 0 
Query:   16 CFCWLYQAKLVILWGVSYSLLFSFEH-------------------FMTYSDGAYRSYLDSLCRILIAKNINKD 69
            CF   Y+A L+ L G+  SLL  F+H                    M  +DG    YL S+C+ ++ +N +  
Sbjct: 1648 CFAKRYKAVLLCLCGLRISLLQLFKHETPVFVKENAGK*FFSGARTMLITDGLSNVYL*SICKSILERNASNP 1866
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BLAST of EMLSAG00000001063 vs. L. salmonis peptides
Match: EMLSAP00000001063 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1176:68302:68620:1 gene:EMLSAG00000001063 transcript:EMLSAT00000001063 description:"maker-LSalAtl2s1176-snap-gene-0.2")

HSP 1 Score: 183.341 bits (464), Expect = 4.306e-61
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 
Query:    1 MDEWKHLQHSWVHYLCFCWLYQAKLVILWGVSYSLLFSFEHFMTYSDGAYRSYLDSLCRILIAKNINKDSYGLVFGINTFFTLLWKKKS 89
            MDEWKHLQHSWVHYLCFCWLYQAKLVILWGVSYSLLFSFEHFMTYSDGAYRSYLDSLCRILIAKNINKDSYGLVFGINTFFTLLWKKKS
Sbjct:    1 MDEWKHLQHSWVHYLCFCWLYQAKLVILWGVSYSLLFSFEHFMTYSDGAYRSYLDSLCRILIAKNINKDSYGLVFGINTFFTLLWKKKS 89
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BLAST of EMLSAG00000001063 vs. L. salmonis peptides
Match: EMLSAP00000011734 (pep:novel supercontig:LSalAtl2s:LSalAtl2s816:133076:134387:-1 gene:EMLSAG00000011734 transcript:EMLSAT00000011734 description:"maker-LSalAtl2s816-augustus-gene-1.4")

HSP 1 Score: 51.2174 bits (121), Expect = 4.864e-9
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 0 
Query:   13 HYLCFCWLYQAKLVILWGVSYSLLFSFEHFMTYSDGAYRSYLDSLCRIL---IAKNINKDSYGLVFGINTFFTLLWK 86
            + + FC +    ++I+ G +  +  ++  +      A+RS    +  I    +A+NINKDSYGLVFGINTFF LLW+
Sbjct:  298 YVILFCSMLNGFILIMMGQTNHIWIAYAGYC-----AFRSLYQMMITIASFEVARNINKDSYGLVFGINTFFALLWQ 369
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001063 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001063 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592955131|gb|GAXK01003422.1|1.021e-268.18TSA: Calanus finmarchicus comp186723_c0_seq2 trans... [more]
gi|592822451|gb|GAXK01132117.1|2.946e+037.78TSA: Calanus finmarchicus comp251673_c1_seq3 trans... [more]
gi|592822452|gb|GAXK01132116.1|2.961e+037.78TSA: Calanus finmarchicus comp251673_c1_seq2 trans... [more]
gi|592822453|gb|GAXK01132115.1|2.961e+037.78TSA: Calanus finmarchicus comp251673_c1_seq1 trans... [more]
gi|592807508|gb|GAXK01147060.1|7.609e+027.40TSA: Calanus finmarchicus comp2301614_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001063 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000010634.306e-61100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1176:6830... [more]
EMLSAP000000117344.864e-937.66pep:novel supercontig:LSalAtl2s:LSalAtl2s816:13307... [more]
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BLAST of EMLSAG00000001063 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001063 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001063 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001063 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1176supercontigLSalAtl2s1176:68302..68620 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1176-snap-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001063 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001063EMLSAT00000001063-696910Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1176:68302..68620+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001063-683829 ID=EMLSAG00000001063-683829|Name=EMLSAG00000001063|organism=Lepeophtheirus salmonis|type=gene|length=319bp|location=Sequence derived from alignment at LSalAtl2s1176:68302..68620+ (Lepeophtheirus salmonis)
ATGGATGAGTGGAAGCATTTACAACATTCTTGGGTTCATTATTTGTGTTT
TTGTTGGCTATATCAAGCTAAATTGGTCATTTTATGGGGAGTGAGTTATT
CACTTCTGTTCAGTTTTGAACATTTTATGACTTATAGTGATGGGGCATAC
CGATCATATTTGGATAGCTTATGTCGGATATTGAGTATTCCAATCATTAT
ATCAAATGATGATCACAATTGKTTTCTTTGAAGTAGCCAAGAACATCAAT
AAAGATAGTTATGGACTCGTTTTTGGAATTAATACTTTTTTTACACTGTT
ATGGAAAAAAAAATCTTGA
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