EMLSAG00000003141, EMLSAG00000003141-685907 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003141
Unique NameEMLSAG00000003141-685907
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003141 vs. C. finmarchicus
Match: gi|592958438|gb|GAXK01000118.1| (TSA: Calanus finmarchicus comp2999957_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 36.965 bits (84), Expect = 6.183e-2
Identity = 19/70 (27.14%), Postives = 33/70 (47.14%), Query Frame = 0 
Query:   67 PFQSFTRAPVTPYPFVKASSIPLPSNKNVLAVGXRFTNAPVLDMEERPVLTPDLVNKENDSGIQEVDDPL 136
              + F ++    Y  +K  +I L ++   L +    +N  + D+EERP+   D  N  NDS + E  + L
Sbjct:  440 KLECFEKSKAEEYEEIKKQNIELENSIKELQINIMKSNEKLSDLEERPMENCDKSNLFNDSNLDETIENL 649
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BLAST of EMLSAG00000003141 vs. C. finmarchicus
Match: gi|592756763|gb|GAXK01197650.1| (TSA: Calanus finmarchicus comp725367_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 3.627e-1
Identity = 23/75 (30.67%), Postives = 38/75 (50.67%), Query Frame = 0 
Query:  225 ISKFSMQTPRHRHPTNTYESFSYLPRAPLNFIRKNHVPTWSLSKHDTNSFRPSFDPINYLKENQLRKAQLLAKHL 299
            ISKF ++  +HR+  ++ + F   P  P +F RK+H+   +L+KH  + F      I      Q +  + L KHL
Sbjct:  798 ISKFRLK--KHRNRVHSKQIFQ-CPTCPQSFTRKDHLEQHNLTKHGNSEF------ICITCRKQFKTERALDKHL 995
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BLAST of EMLSAG00000003141 vs. L. salmonis peptides
Match: EMLSAP00000003141 (pep:novel supercontig:LSalAtl2s:LSalAtl2s175:511439:512507:1 gene:EMLSAG00000003141 transcript:EMLSAT00000003141 description:"snap_masked-LSalAtl2s175-processed-gene-5.4")

HSP 1 Score: 646.736 bits (1667), Expect = 0.000e+0
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0 
Query:    1 MKAAVKLPPHIIPIVNDISMESNIKSLKNAPFSNRRSFRLFSKLGKPWHNSALFKKRRNRKKRKRYPFQSFTRAPVTPYPFVKASSIPLPSNKNVLAVGXRFTNAPVLDMEERPVLTPDLVNKENDSGIQEVDDPLFYNQDLTFNSLDNSDERKVCLCCPWDDIFLQNSRRRNTKAKISLDGVDCSNFSPLEIKFQIQEPNDQIVKRDTNKIPSSESDYYILNEISKFSMQTPRHRHPTNTYESFSYLPRAPLNFIRKNHVPTWSLSKHDTNSFRPSFDPINYLKENQLRKAQLLAKHLLRTAIQEEKTRPYGHYY 316
            MKAAVKLPPHIIPIVNDISMESNIKSLKNAPFSNRRSFRLFSKLGKPWHNSALFKKRRNRKKRKRYPFQSFTRAPVTPYPFVKASSIPLPSNKNVLAVGXRFTNAPVLDMEERPVLTPDLVNKENDSGIQEVDDPLFYNQDLTFNSLDNSDERKVCLCCPWDDIFLQNSRRRNTKAKISLDGVDCSNFSPLEIKFQIQEPNDQIVKRDTNKIPSSESDYYILNEISKFSMQTPRHRHPTNTYESFSYLPRAPLNFIRKNHVPTWSLSKHDTNSFRPSFDPINYLKENQLRKAQLLAKHLLRTAIQEEKTRPYGHYY
Sbjct:    1 MKAAVKLPPHIIPIVNDISMESNIKSLKNAPFSNRRSFRLFSKLGKPWHNSALFKKRRNRKKRKRYPFQSFTRAPVTPYPFVKASSIPLPSNKNVLAVGXRFTNAPVLDMEERPVLTPDLVNKENDSGIQEVDDPLFYNQDLTFNSLDNSDERKVCLCCPWDDIFLQNSRRRNTKAKISLDGVDCSNFSPLEIKFQIQEPNDQIVKRDTNKIPSSESDYYILNEISKFSMQTPRHRHPTNTYESFSYLPRAPLNFIRKNHVPTWSLSKHDTNSFRPSFDPINYLKENQLRKAQLLAKHLLRTAIQEEKTRPYGHYY 316
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003141 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003141 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592958438|gb|GAXK01000118.1|6.183e-227.14TSA: Calanus finmarchicus comp2999957_c0_seq1 tran... [more]
gi|592756763|gb|GAXK01197650.1|3.627e-130.67TSA: Calanus finmarchicus comp725367_c0_seq1 trans... [more]
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BLAST of EMLSAG00000003141 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000031410.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s175:51143... [more]
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BLAST of EMLSAG00000003141 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003141 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003141 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003141 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s175supercontigLSalAtl2s175:511439..512507 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s175-processed-gene-5.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003141 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003141EMLSAT00000003141-698988Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s175:511439..512507+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003141-685907 ID=EMLSAG00000003141-685907|Name=EMLSAG00000003141|organism=Lepeophtheirus salmonis|type=gene|length=1069bp|location=Sequence derived from alignment at LSalAtl2s175:511439..512507+ (Lepeophtheirus salmonis)
GGAGCAGCTAATATAATAATGAAGGCAGCAGTAAAACTGCCCCCTCATAT
CATTCCAATCGTAAATGATATATCCATGGAGTCAAATATTAAAAGTAGAT
ATGTTCCTTTATGCTAATTAGTTAACTATTAAGAGTAGTAGTTTCTGGTT
TTTTTAGGTCTTAAGAATGCGCCTTTCTCAAATCGTCGGTCATTCAGGCT
TTTCTCTAAGTTAGGAAAACCATGGCACAATTCAGCCCTTTTCAAAAAAA
GACGAAATCGAAAGAAACGAAAAAGATATCCCTTTCAAAGCTTTACTCGT
GCTCCCGTAACTCCTTATCCTTTTGTCAAGGCTTCATCTATTCCTCTTCC
ATCAAATAAAAATGTTTTGGCTGTTGGGMATAGATTTACAAACGCTCCAG
TCTTGGATATGGAAGAACGTCCAGTTTTAACACCAGACTTAGTTAATAAA
GAAAATGATAGTGGAATTCAGGAAGTCGATGATCCACTGTTTTATAATCA
GGACCTCACATTCAATTCTTTGGATAATAGTGATGAAAGAAAGGTGTGTT
TATGTTGTCCATGGGATGACATTTTCCTACAAAATTCTAGGAGACGAAAT
ACAAAAGCAAAAATTTCTTTAGACGGAGTAGATTGTTCCAACTTTTCCCC
ACTTGAAATCAAATTTCAAATTCAAGAGCCAAACGATCAAATTGTGAAGC
GAGACACGAACAAAATACCCTCTTCAGAATCAGATTACTATATATTGAAT
GAAATATCCAAATTTTCAATGCAAACTCCTAGACATAGGCATCCGACAAA
CACTTATGAGAGTTTTTCGTACTTACCAAGAGCTCCACTCAATTTCATAA
GGAAAAATCATGTTCCTACCTGGTCATTGTCAAAACACGACACAAATTCA
TTTCGTCCAAGTTTTGATCCAATAAATTATCTTAAAGAAAATCAACTTCG
CAAGGCTCAGCTACTGGCAAAACATCTTCTCAGAACTGCAATTCAGGAAG
AAAAGACTAGACCATATGGACATTATTACTAGAAAATATCTACATTATAA
TATTTATTTCAAAGCGGGA
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