EMLSAG00000003890, EMLSAG00000003890-686656 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003890
Unique NameEMLSAG00000003890-686656
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003890 vs. C. finmarchicus
Match: gi|592760910|gb|GAXK01193503.1| (TSA: Calanus finmarchicus comp936280_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.047e+0
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = 0 
Query:    4 IPSDIVNCWCGSLLTINNEVSEKR 27
            +P   V CW GS LT N+  + KR
Sbjct: 1573 LPLKFVRCWVGSRLTQNSFCTSKR 1644
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BLAST of EMLSAG00000003890 vs. C. finmarchicus
Match: gi|592760911|gb|GAXK01193502.1| (TSA: Calanus finmarchicus comp936280_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.055e+0
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = 0 
Query:    4 IPSDIVNCWCGSLLTINNEVSEKR 27
            +P   V CW GS LT N+  + KR
Sbjct: 1683 LPLKFVRCWVGSRLTQNSFCTSKR 1754
[Close]
BLAST of EMLSAG00000003890 vs. L. salmonis peptides
Match: EMLSAP00000003890 (pep:novel supercontig:LSalAtl2s:LSalAtl2s210:342095:342383:-1 gene:EMLSAG00000003890 transcript:EMLSAT00000003890 description:"maker-LSalAtl2s210-snap-gene-3.9")

HSP 1 Score: 121.324 bits (303), Expect = 1.116e-37
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 
Query:    1 MAKIPSDIVNCWCGSLLTINNEVSEKRSSNAPRTKRPDKLTVTTLRNITCPETVNGSSNG 60
            MAKIPSDIVNCWCGSLLTINNEVSEKRSSNAPRTKRPDKLTVTTLRNITCPETVNGSSNG
Sbjct:    1 MAKIPSDIVNCWCGSLLTINNEVSEKRSSNAPRTKRPDKLTVTTLRNITCPETVNGSSNG 60
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003890 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003890 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592760910|gb|GAXK01193503.1|5.047e+045.83TSA: Calanus finmarchicus comp936280_c0_seq2 trans... [more]
gi|592760911|gb|GAXK01193502.1|5.055e+045.83TSA: Calanus finmarchicus comp936280_c0_seq1 trans... [more]
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BLAST of EMLSAG00000003890 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000038901.116e-37100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s210:34209... [more]
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BLAST of EMLSAG00000003890 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003890 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003890 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003890 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s210supercontigLSalAtl2s210:342095..342383 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s210-snap-gene-3.9
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003890 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003890EMLSAT00000003890-699737Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s210:342095..342383-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003890-686656 ID=EMLSAG00000003890-686656|Name=EMLSAG00000003890|organism=Lepeophtheirus salmonis|type=gene|length=289bp|location=Sequence derived from alignment at LSalAtl2s210:342095..342383- (Lepeophtheirus salmonis)
ATGGCGAAAATCCCTTCAGACATTGTAAATTGCTGGTGTGGATCATTATT
GACGATAAATAACGAAGTGTCAGAAAAAAGGTCAAGTAATGCTCCAAGAA
CAAAGTAAGGTCCTCAACTATAATCATTTAATGATTGTACTTCCTACAAT
GTGGTCATTAAGTTCGATAGGGAATCCATTAAAAAAGAGGTCCTCAAGTA
ACTAATGAAGAAGGCCAGACAAATTAACCGTCACCACTTTGAGGAATATT
ACCTGTCCGGAAACAGTAAATGGCTCTTCCAATGGTTAA
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