EMLSAG00000004274, EMLSAG00000004274-687040 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004274
Unique NameEMLSAG00000004274-687040
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000004274 vs. L. salmonis peptides
Match: EMLSAP00000004274 (pep:novel supercontig:LSalAtl2s:LSalAtl2s224:26769:33418:1 gene:EMLSAG00000004274 transcript:EMLSAT00000004274 description:"maker-LSalAtl2s224-augustus-gene-0.9")

HSP 1 Score: 407.912 bits (1047), Expect = 6.481e-146
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0 
Query:    1 KGVQHYLILLHSKQFHILGNTVITTTKKDNLTSGSGIIPKTTSRAGNSTLEFKKSSPVENVPSNSGKYIHIEKVEKIVSSERIRHQDQKYLLQQQMLPQILIIQRQVPGYLVSVINYDLIKHFCSTCISIFVFSATTANPQTNSETSTLGSRIPNNSTLGSTISLSTESTPSNSNNSTSESGIYPTTTNAQTNYENSTLGSGIL 204
            KGVQHYLILLHSKQFHILGNTVITTTKKDNLTSGSGIIPKTTSRAGNSTLEFKKSSPVENVPSNSGKYIHIEKVEKIVSSERIRHQDQKYLLQQQMLPQILIIQRQVPGYLVSVINYDLIKHFCSTCISIFVFSATTANPQTNSETSTLGSRIPNNSTLGSTISLSTESTPSNSNNSTSESGIYPTTTNAQTNYENSTLGSGIL
Sbjct:    1 KGVQHYLILLHSKQFHILGNTVITTTKKDNLTSGSGIIPKTTSRAGNSTLEFKKSSPVENVPSNSGKYIHIEKVEKIVSSERIRHQDQKYLLQQQMLPQILIIQRQVPGYLVSVINYDLIKHFCSTCISIFVFSATTANPQTNSETSTLGSRIPNNSTLGSTISLSTESTPSNSNNSTSESGIYPTTTNAQTNYENSTLGSGIL 204
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004274 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004274 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004274 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000042746.481e-146100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s224:26769... [more]
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BLAST of EMLSAG00000004274 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004274 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004274 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004274 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s224supercontigLSalAtl2s224:26769..33418 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s224-augustus-gene-0.9
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004274 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004274EMLSAT00000004274-700121Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s224:26769..33418+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004274-687040 ID=EMLSAG00000004274-687040|Name=EMLSAG00000004274|organism=Lepeophtheirus salmonis|type=gene|length=6650bp|location=Sequence derived from alignment at LSalAtl2s224:26769..33418+ (Lepeophtheirus salmonis)
AAAGGGGTTCAACATTATTTAATACTTTTACATTCTAAGCAATTCCATAT
TTTAGGGAATACTGTCATCACAACAACAAAAAAAGGTATTTGAACATTAA
ATGAATAAATTACTTAAATAATTTAGATAAAACCACAAACACTCTACTTG
TAATTTGAAACAATAAAGAGCTGTACTTAACGGTGAAGATTTTTATAAAA
TGTTTTTAATTGCTTTTTAAACAATATTTTTAACTTATTGGAGTTGTATT
TCTTAGATGTCATTGCTTTAATTGATAGGAGGTTATTTAAATACTGATTA
TGAATACGGAAAAATTTTGGAAGACAATTTTTCCAAAAATAATTAAACTA
TCAAAAGGTCCAACTTCATTGGCGCTTCATTTTATTGCTAGAACTTTGTA
GTATGTTCCTAAAATGTTTATTTTGAATCAATGCAATCTTTGTTATTGCT
ATGATAAAATATTTTCTAGGAATTATACGTATTTTTAGCCCTTTCTAATA
AAGGTTTCGTGAATATAATTACATTTTTCCCTTATAAGTTGTTTTTTTTT
TCTATTATTTTCAATGAGAGGCGTACTTGTTGCTACCAAATCTATTAATC
AAGGGGCGAAACGAATACCACATGCTCAAAGATTATAAATAATAATCGGA
ATCGCAAATTCAACATATAAATATTTATTATTATTTATGACTAGTATTAA
ACTATTAATTACTTTTCTAAGTCAAGAAAAAAAATAGCCCAAAATATAAT
AGTTGAAATTTAATTTAACCTTTCAAATTGTTTATCCAAAAAATTAAATG
TTCTGTTAATAACTATGTATTTTTGAAATGTTTCTCTTTTTTAATTAGAA
ATTTTTTTTTCAAAAAAATTTATATTAGAAATTTAATTTTTCAATTTTTT
TTTCCAAAAATTTACTTTTTTGAGAACAGCTGTAGATTTTTGAAATTTTT
CAATTTTTTAATTAGAATTTTTTTTTCAAAAAAATTTATATTAGAAATTT
AATATTTCTATTTTTTTTCAAAAAAATTTATATTAGAAAATTAATTTTTC
TATTTTCTTTTCAAAAAAATTTATATTAGAAATTTAATTTTTCTATTTTC
TTCCAAAAAATTTACTTTTTGAGAACAGCTGTAGATTTTTGAATGTTTTT
CCAACAAATGTAATATTGGAATTTTTTCCCGGAATATTTAATATCTTATG
ACTACTGTAAATTTTTAAGAATAGACATGGGTTTTTGAATTTTTTTTCAC
AAAAAAATTACTTTTTTGTAAATAGCTGTTAATTTTTGGATTTTTTTTAA
AATATTAAATTACATATTTGAATTTTATTTTTTAAATTTAATATTTAAAA
TTTCATTTGTAAGTTTTTTTCCAAAGATTTTTTTTTTTTCAAAAAAAATT
TAATTTTGAAAAATGTTATTGGAATCGTTGGATTTGAAATTCATTTTAAT
GACATTCTTAATACAAACTTAATTAATAGTGTTGAGTTTCGGTCTGGAAA
TCCTAGACCGGTATGAGATCATTATATTTCTTGATGGGGCGAACTAATTT
GTTCCAACAAAAAGCTGGGGTTGGAACGGTCTCATAGAAGAATTCAGTCT
AAATCGGTCCGAAGGAAAAATTCATTCTTGTTCAGTCCCAAAAATATTGG
TTTAGACCGATTTTACAGATAAATCGTTTTCAAACCCAGCCCCTCCCAAA
ATTTAATCCTGATCTGTGGGGGGTCCTTGTTATACAATTTGTACACATAT
TAAAGACGGTAAAAATCATATGACGTCATTTTACCGATGTTTGCAATTTA
GAAACAGACCTGACTTCATGATAAACTCATGTTTAAAATAAGTCTAGATT
GAATTTTAAATGACACCGATTTTTTTATTTTTTTGTGAGACTGATTTATT
TCAATATTATTTGAGGAATCAAATTAGTCAGATTCAACATAATTCATAAC
GGTTAGAGACGAAGATAGAATGTCCAGACAAAATACTAACACTCATATGT
ATATATAGGGTTTTCCAATCGGTTATGATTTATAATACTTTGATTAATTA
AGGTTTAACCCTTTTTTTTTAACTTAGGATTTTTTKGCACCCCAATTTTG
ATAAAATCATTTTTAATATGTTTTTTGGTCTCATATTGTATTACACCTAT
TTTTTATTTTTTTTCGTAAAAAAATCTCAGAATTACGATATGTTTTAGAA
CAAATACTGTATACATATAAGAGACGACAGGATCAAAATTAATTCAAGCT
ACTTCTTATAATATTATTATTTATTTTTTTTGAATAAAATTTCAAAAACC
CATAGCAGTGTACAAAAAACTAAATTTTTTCACAAAAAAATCTAAAATCT
ACAGTTTTTCACAATTTTTTCTTGAAAATCAAAGTTTAAATATAACATTT
TTTTCGACAAAATTTGCAATATTAAATATTATTATTACCTACTTGGTAAA
TTGTAATAATAACGAGTGTTGACTGTAGGTATTTCAAAAATGTTTAGATT
GATTTATAATGTACATTATAGAAATGGATTTAATAGATAATTATAATTTC
AAATGCTGAAGAATAAATACATTAAACTTTTGTTAAAAATTAAAAATAGC
AAAAAAAAAAAAAAATATTCAATACAAAAAATCAAAACCGAAAAATTCCC
TGATCGGTTGAATAGCTTATTTTTTAAATTTAATTNNNNNNNNNNNNNNA
ACCCTTTCAACTTTTCCCTGTCTTTTAAACTATAGATAATTTAACTTCGG
GATCCGGAATAATTCGTGAGTATCAGAGATTAATACTCGATAAATGAGAG
GTGTAGTAATTTGATTTCAATCTATTTATTTTCTGCTTCAACAGCAAAAA
CTACATCAAGAGCTGGTGAGTTAAAGAGTTTTTCCTTTCTTTTCAACTTT
TTTCTTTTCTATAAATTATATGTAGGTAATTCAACTTTAGAATTCAAAAA
ATCCTGTGAGTATTATAAAATAATTAAAAATCGAAAAACTTTTACAAGTG
TTACAATTTGATTCAAATCTCTGAATTTTTAGCTCCAGTAGAAAATGTTC
CATCAAATTCTGGTAAGTATATACATATTGAAAAGGTTGAAAAAATCGTT
AGTAGTGAGGTTAGTGTAAACAAAAATGTTTTTCGAAAATTTGTCTAAAA
GTCAGAAAAATGATGTTGGATTAATATATATGTTGTGTTCTAGTTATGAG
CTATGTACAAGTATGTGCAATTTCTTGGTCTTAAAATGCACTACTTAATT
GCGATATTTGTTATTCTAATTATGGCTATTGTGTATTTACGAGTAATATA
ATTGTGGGCATTTTAACTATTTAATGTGTGAGATTATACTAATATTTTTT
GTATTAAAATAGCCAAAAATTACATCAATCATCCATCGAATATTCAATGA
TTGCGTTATCCTCATACAAAATACAATAACTCCTTCATTTAAAATTATTC
ATATCATTTTTTGGTTGCAACTTGTAGACAAAATATATAGAGATTAGCTA
TATATTAAATCATATCTTTTAATTAACTAGAGGCTCTTGAAAAACTTATA
ATGAGTATGGTAATTTTTGACGGCTAYAAWGTTGTATTTTTTRAATTGCA
TTAGTCAACTATCAACTTTTTACTATCCTTTAATTTCTAGAGAATTCGAC
ATCAGGATCAGAAATATCTCGTGAGTATTAGAAATTAAAACTCAATAAAT
GACTAATATTGTAATTCTATTTCAATCTTTGGATTTTTTTAGCTTCAACA
GCAAATGTTACCTCAAATTCTGGTAAACAAGGACATTTAAAAACAGTTTT
TCTAATAAAAAAATCAATGGCATCGTTAGTTCCTTCAAAATTTGTAGGAA
AATCATAAATATAATGGAAAAAACAAACAAGAATTGCATTAGTTTATTGC
AATTTTTAATTTATTTGAATTAATTAGATGCTATTGCCAACCTCATTATC
AGGATGGTAACAGTTGAATAGTCTAAGCTGATTCTTTTCTTTCCAAAATT
ATATATAGATAATTCAACGTCAAGTTCCGGGATATCTCGTGAGTGTCATA
AATTATGACTTGATAAAACACTTCTGTTCTACTTGCATTTCAATCTTTGT
ATTTTCAGCTACAACAGCAAATCCTCAAACAAACTCTGGTAAGCAAAGGC
TATTAAAAGAAGTTATCTAAAAAAACTATCTAAATCAATCATTCTTAACT
TTGATAAAATTCGTCTTTTTCGGAAATTTATTTCTTTGAATGGATGAGAT
GTTATTGCAATACTTATTATGAGATTATCAATATTATGAAACTAGATATT
TGCCTTTTTTATTTGAATTAAATCTTTTTTTATACTTGTCTTCAAAATTT
TAGAAACTTCAACTCTAGGATCGAGAATACCTAGTAAGTGTTTMAAATTA
TGYCTCAATTCATTTTTGACAAAAAAAAAAAAAAAAACGGAAATCAGMCG
TAAAAAAAATGAATGTATCATTTTATAGAATGTAAAACTTTTTATAAATT
TGCCTGATCATAAAAAAAAAGACGGATTGGGAACCAAAACTTGTAGTAGT
TATGACTAAATTACGAAAAACGTGATTTTTATGTTGTCAAGAAAGGACAG
GTCAAAACCAATTTTTCAGATGTTTAAATACCATATTTAGGATTATTTTT
ATTCATTATGTCTTCCTTTACAAAAAATAACAGACTCGACACGCTCGCAA
ACAGATGGGCAGCGCTTGTCCATGAAGGCCGTGTCCATTACCTACCACGC
TGTTACAATGACAGCTCGGAGAGAATCCAAATTTGGATATGATGCGACAG
TCATTCTCTTCCAAGACACCCCCAACTGAAAAGTCCGGAGGGCGGAGGTC
AGGGCTGGAGGAGGGCCACATTAAAGCAGCCCAGAAATCAGTTATATTGT
TGCTCCAGAAGTTTTGAGTCTTGTTAGCTGTAAACAATTATAAACACCAT
TCCCATTCTTATTGGCCTCTTGATATTGTAGGCGGTCTGGATTGAAATGT
CAACAGACTCTGGAGCCTTCTCGGGACTAACACTTGCACAGAGGACATGC
GTTGTTTTTTGTTGTTGCTCTGAAATTTTACACTTAAAGACATGGGATAA
AAACAAAACATGCTTATTGTCCACCTGCTGTTTGATTGCGTAATGAAACC
TGGTAATTAAAAATAACGGGGATAAATTAATTGTTAGATGATACTTCAAG
TTTTTGGGACCCCTCTGTATTTTGGATTTCATTTTTTACAAGTTTTTATG
TTACTTAAATCATTTTTCTTTATTTTGATCCTTCCTCTATTAGTAAGAGG
CTCTAAATAACGTACTATGAGATGATATCATGTAGAACAAAATTTTGATA
GTCTGACTTGCTATTTTGTCAATGGATTCAACCTATTTTAAATTTCTCTT
TTCCTTTAAATTGTAGATAATTCAACTTTAGGATCTACGATATCTCGTGA
GTGTCAGAGATTATTATTATAATTTCATTTCAATCCTTGTATTTTCAGTG
TCAACAGAAAGCACTCCTTCAAATTCTAGTAAGTAATGGCAATTGAATAC
AGCTTTAAWAAAATTGATAGCCRGCCCCCCCCCCCCGCTTTTTTCCAATG
AATTATCCTTTTTAACGTTTTCAACTCCAACAGAAAATGCTCCATCAAAT
TCTGGCTAGTAACTAGAATCAAATCAACTCAGTTTTAAATAACATGATAA
CATAATCATTTCTTAAGATAAAATATGGGACTTTTTTATAAAATTTGTCT
CCAAAAGATCAAATTTAAGTGGGATTTTATTTATAAAAAAGTATTTTTTT
AAGGGCATTAAATGATCTCTTGAATTTGACAAAAATTTCTTCCTGGACAA
AATCCTCAAACTGCTTCACAATAACGGTATAAATTAATCCTACAACAATA
ACATTTGCTCGTCACTCTTGAGAGTAGCCGGTTTGCTATTTAGGATTTAG
AGTTGAGTAAAGTTAAATCTGTAGCTTTGTTTTCCCTTGAGACTTTTCTA
TTCCAATTGGAAATCTTGAACAGAACCATAAACTTGCCAATGTAATTGTT
AGTTGTTCTAAATCTTTTATGATGACCAAACATTTTACAACACCCATTAG
TATTTATAAAAACAGTTTCCTCATAATTATGAACCGTATATTTGCTACTT
CTTTTTCCTCCATCCAGAGATTTGATTTTGATTCGGGGTTTCAAAATGTA
TTGTATTAGAGTTTTAGGGTTAAATTTTATTTATTCAAATTAAAAAAAAC
CATAGAAATACATTATATAAGTAAGAAATTTTTTGATTCCCTTGGCTTTT
TCTTTAATTAATTGAAATTCAACTTTCTTCTTCCGTACAATATTCTAGAT
AATTCAACTTCAGAATCTGGAATATATCGTGAGTGTTATAAATTATGGCT
CCATCAAATAACTGTTGCTGTAATTTAATTTCAATTCTTGCATTTTCAGC
TACAACAACAAACGCTCAAACGAATTATGGTAAGTAAAAACAATTGAAGA
AAGTTAATTAAAAAAAATGATAGGATCGATAATTCTTACCTTTTTCATTT
ATTTGAATGGATTTTGATTTCTTTATTCAAATGAGTCAATTATTTTCTTC
AACTTTTTCTTTAAATTATAGAGAATTCAACTTTAGGATCAGGAATATTA
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