EMLSAG00000007971, EMLSAG00000007971-690737 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007971
Unique NameEMLSAG00000007971-690737
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000007971 vs. C. finmarchicus
Match: gi|592954775|gb|GAXK01003778.1| (TSA: Calanus finmarchicus comp454941_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 6.712e-2
Identity = 17/47 (36.17%), Postives = 25/47 (53.19%), Query Frame = 0 
Query:    8 PMDLLLIIRTLCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENVLMD 54
            P     + R   K++ +G Y +K  + N RSR FGDL+ H  +V  D
Sbjct:  955 PHRAWFVARACLKVQAEG-YEEKDRINNKRSRAFGDLVDHYSDVTAD 1092
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BLAST of EMLSAG00000007971 vs. C. finmarchicus
Match: gi|592918504|gb|GAXK01039871.1| (TSA: Calanus finmarchicus comp272829_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 1.276e-1
Identity = 17/45 (37.78%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:    7 PPMDLLLIIRTLCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENV 51
            PP  + LI+RT  K +     S+  +LP+G  R F DL  HK+++
Sbjct:  963 PPAIVRLILRTCLKHKKQPDLSE--NLPDGSVRSFQDLKMHKQDI 1091
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BLAST of EMLSAG00000007971 vs. C. finmarchicus
Match: gi|592868989|gb|GAXK01088573.1| (TSA: Calanus finmarchicus comp870722_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 1.792e+0
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 0 
Query:   35 NGRSRRFGDLMSHKENVLMD 54
            N R + FGDL+   ENVLMD
Sbjct:  249 NKREQNFGDLIEILENVLMD 308
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BLAST of EMLSAG00000007971 vs. C. finmarchicus
Match: gi|592929655|gb|GAXK01028890.1| (TSA: Calanus finmarchicus comp626703_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.836e+0
Identity = 15/35 (42.86%), Postives = 20/35 (57.14%), Query Frame = 0 
Query:   18 LCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENVL 52
            LC L+ DGG+S +V L +G  R     +  KE VL
Sbjct:  124 LCLLQPDGGHSLQVGLSHGSYRFSFSCIWEKEEVL 228
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BLAST of EMLSAG00000007971 vs. C. finmarchicus
Match: gi|592881350|gb|GAXK01076551.1| (TSA: Calanus finmarchicus comp99291_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.064e+0
Identity = 14/31 (45.16%), Postives = 19/31 (61.29%), Query Frame = 0 
Query:   28 SKKVSLPNGRSRRFGDLMSHKENV-LMDPQL 57
            SKK  L  G+ R   DLM++K+ + LM  QL
Sbjct: 1356 SKKTGLEEGKKREQSDLMANKKEIALMKRQL 1448
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BLAST of EMLSAG00000007971 vs. L. salmonis peptides
Match: EMLSAP00000007971 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4712:3549:3825:1 gene:EMLSAG00000007971 transcript:EMLSAT00000007971 description:"maker-LSalAtl2s4712-snap-gene-0.4")

HSP 1 Score: 134.035 bits (336), Expect = 1.891e-42
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 
Query:    1 MLDIKEPPMDLLLIIRTLCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENVLMDPQLYTIFYRYN 65
            MLDIKEPPMDLLLIIRTLCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENVLMDPQLYTIFYRYN
Sbjct:    1 MLDIKEPPMDLLLIIRTLCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENVLMDPQLYTIFYRYN 65
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BLAST of EMLSAG00000007971 vs. L. salmonis peptides
Match: EMLSAP00000000651 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11005:51:981:-1 gene:EMLSAG00000000651 transcript:EMLSAT00000000651 description:"maker-LSalAtl2s11005-snap-gene-0.1")

HSP 1 Score: 111.309 bits (277), Expect = 2.338e-31
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 0 
Query:    1 MLDIKEPPMDLLLIIRTLCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENVLMDPQLYTIFYRY 64
            MLD KEP + LLLIIRTLCKLRYDGGYSKKVSLPNG SRRFGDLMSHKENVLMDP+L+ +F+ +
Sbjct:   73 MLDSKEPQITLLLIIRTLCKLRYDGGYSKKVSLPNGXSRRFGDLMSHKENVLMDPRLHKMFFVF 136
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BLAST of EMLSAG00000007971 vs. L. salmonis peptides
Match: EMLSAP00000012244 (pep:novel supercontig:LSalAtl2s:LSalAtl2s8920:373:1847:1 gene:EMLSAG00000012244 transcript:EMLSAT00000012244 description:"maker-LSalAtl2s8920-snap-gene-0.2")

HSP 1 Score: 109.383 bits (272), Expect = 2.283e-30
Identity = 51/64 (79.69%), Postives = 59/64 (92.19%), Query Frame = 0 
Query:    1 MLDIKEPPMDLLLIIRTLCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENVLMDPQLYTIFYRY 64
            +LD++EP + LLLIIRTLCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENVLMDP+L  +F+ +
Sbjct:   73 ILDLQEPHITLLLIIRTLCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENVLMDPKLNKMFFVF 136
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BLAST of EMLSAG00000007971 vs. L. salmonis peptides
Match: EMLSAP00000001452 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1247:333673:334478:1 gene:EMLSAG00000001452 transcript:EMLSAT00000001452 description:"augustus_masked-LSalAtl2s1247-processed-gene-2.4")

HSP 1 Score: 102.449 bits (254), Expect = 1.352e-28
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 0 
Query:    1 MLDIKEPPMDLLLIIRTLCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENVLMDPQLYTIFYRY 64
            MLD+KEPPMDLL I+RTLCKL+YDGGYSK+VSLPNGRSR+F DL+SHKEN+LM+P+    F  Y
Sbjct:   73 MLDLKEPPMDLLFIVRTLCKLKYDGGYSKEVSLPNGRSRKFIDLVSHKENILMNPEHKKRFLTY 136
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BLAST of EMLSAG00000007971 vs. L. salmonis peptides
Match: EMLSAP00000001454 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1247:336907:338618:1 gene:EMLSAG00000001454 transcript:EMLSAT00000001454 description:"augustus_masked-LSalAtl2s1247-processed-gene-2.0")

HSP 1 Score: 98.5969 bits (244), Expect = 1.000e-26
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 0 
Query:    1 MLDIKEPPMDLLLIIRTLCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENVLMDPQ--------LYTIFYR 63
            MLD+KEPPMDLL I+RTLCKL+YDGGYSK+V LPNGRSR+F DL+SHKE++LM+P+        L TI Y+
Sbjct:   73 MLDLKEPPMDLLFIVRTLCKLKYDGGYSKEVYLPNGRSRKFIDLVSHKEDILMNPEHKKRLLTYLATIIYK 143
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BLAST of EMLSAG00000007971 vs. L. salmonis peptides
Match: EMLSAP00000008836 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5500:3079:4247:-1 gene:EMLSAG00000008836 transcript:EMLSAT00000008836 description:"maker-LSalAtl2s5500-snap-gene-0.4")

HSP 1 Score: 81.2629 bits (199), Expect = 2.237e-20
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 0 
Query:    2 LDIKEPPMDLLLIIRTLCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENVLMDPQLYTIFYRY 64
            LD K PP +LL I+R LCKL+Y+GGYSK+VS+PNG  RRF D+   K+N+L+DP+    F+ Y
Sbjct:   74 LDSKXPPQNLLFIVRILCKLKYNGGYSKEVSMPNGVYRRFDDVAYFKDNILLDPEWKNTFFEY 136
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BLAST of EMLSAG00000007971 vs. L. salmonis peptides
Match: EMLSAP00000002794 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1613:87683:89928:-1 gene:EMLSAG00000002794 transcript:EMLSAT00000002794 description:"snap_masked-LSalAtl2s1613-processed-gene-0.6")

HSP 1 Score: 65.4698 bits (158), Expect = 1.387e-14
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 0 
Query:    1 MLDIKEPPMDLLLIIRTLCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENVLMD 54
            MLDIKEPPMDLLLIIRTLCKLRYDGGYSKK  + N    + G  +   E+ ++D
Sbjct:   73 MLDIKEPPMDLLLIIRTLCKLRYDGGYSKKGIIKN----KLGGALEINESEVLD 122
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BLAST of EMLSAG00000007971 vs. L. salmonis peptides
Match: EMLSAP00000003104 (pep:novel supercontig:LSalAtl2s:LSalAtl2s174:364234:370462:-1 gene:EMLSAG00000003104 transcript:EMLSAT00000003104 description:"maker-LSalAtl2s174-augustus-gene-3.18")

HSP 1 Score: 47.3654 bits (111), Expect = 8.350e-8
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 0 
Query:   31 VSLPNGRSRRFGDLMSHKENVLMDPQLYTIFYRY 64
            ++LPNGRSRRF DL+SHK+N+LMD      F+ Y
Sbjct:  589 LTLPNGRSRRFVDLISHKDNILMDSARKDAFFTY 622
[Close]
BLAST of EMLSAG00000007971 vs. nr
Match: gi|290562039|gb|ADD38416.1| (SET and MYND domain-containing protein 3 [Lepeophtheirus salmonis])

HSP 1 Score: 127.872 bits (320), Expect = 1.151e-34
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 
Query:    1 MLDIKEPPMDLLLIIRTLCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENVLMDPQLYTIFYRY 64
            MLDIKEP MDLLLIIRTLCKLRYDGGYSKKVSLPNG SRRFGDLMSHKENVLMDPQLYT+FYRY
Sbjct:   73 MLDIKEPHMDLLLIIRTLCKLRYDGGYSKKVSLPNGCSRRFGDLMSHKENVLMDPQLYTMFYRY 136
[Close]
BLAST of EMLSAG00000007971 vs. nr
Match: gi|225711848|gb|ACO11770.1| (SET and MYND domain-containing protein 3 [Lepeophtheirus salmonis])

HSP 1 Score: 103.99 bits (258), Expect = 7.368e-25
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 0 
Query:    1 MLDIKEPPMDLLLIIRTLCKLRYDGGYSKKVSLPNGRSRRFGDLMSHKENVLMDPQLYTIFYRY 64
            MLD+KEPP+DLL I+RTLCKL+YDGGYSK+VSLPNGRSR+F DLMSHKEN+LM+P+    F  Y
Sbjct:   73 MLDLKEPPLDLLFIVRTLCKLKYDGGYSKEVSLPNGRSRKFIDLMSHKENILMNPEHKKRFLTY 136
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007971 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007971 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592954775|gb|GAXK01003778.1|6.712e-236.17TSA: Calanus finmarchicus comp454941_c0_seq1 trans... [more]
gi|592918504|gb|GAXK01039871.1|1.276e-137.78TSA: Calanus finmarchicus comp272829_c0_seq1 trans... [more]
gi|592868989|gb|GAXK01088573.1|1.792e+060.00TSA: Calanus finmarchicus comp870722_c1_seq1 trans... [more]
gi|592929655|gb|GAXK01028890.1|3.836e+042.86TSA: Calanus finmarchicus comp626703_c1_seq1 trans... [more]
gi|592881350|gb|GAXK01076551.1|7.064e+045.16TSA: Calanus finmarchicus comp99291_c1_seq1 transc... [more]
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BLAST of EMLSAG00000007971 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 8
Match NameE-valueIdentityDescription
EMLSAP000000079711.891e-42100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s4712:3549... [more]
EMLSAP000000006512.338e-3181.25pep:novel supercontig:LSalAtl2s:LSalAtl2s11005:51:... [more]
EMLSAP000000122442.283e-3079.69pep:novel supercontig:LSalAtl2s:LSalAtl2s8920:373:... [more]
EMLSAP000000014521.352e-2873.44pep:novel supercontig:LSalAtl2s:LSalAtl2s1247:3336... [more]
EMLSAP000000014541.000e-2666.20pep:novel supercontig:LSalAtl2s:LSalAtl2s1247:3369... [more]
EMLSAP000000088362.237e-2055.56pep:novel supercontig:LSalAtl2s:LSalAtl2s5500:3079... [more]
EMLSAP000000027941.387e-1462.96pep:novel supercontig:LSalAtl2s:LSalAtl2s1613:8768... [more]
EMLSAP000000031048.350e-858.82pep:novel supercontig:LSalAtl2s:LSalAtl2s174:36423... [more]
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BLAST of EMLSAG00000007971 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007971 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007971 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 2
Match NameE-valueIdentityDescription
gi|290562039|gb|ADD38416.1|1.151e-3495.31SET and MYND domain-containing protein 3 [Lepeopht... [more]
gi|225711848|gb|ACO11770.1|7.368e-2573.44SET and MYND domain-containing protein 3 [Lepeopht... [more]
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BLAST of EMLSAG00000007971 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s4712supercontigLSalAtl2s4712:3549..3825 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s4712-snap-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteSET and MYND domain-containing protein 3 [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007971 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007971EMLSAT00000007971-703818Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s4712:3549..3825+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007971-690737 ID=EMLSAG00000007971-690737|Name=EMLSAG00000007971|organism=Lepeophtheirus salmonis|type=gene|length=277bp|location=Sequence derived from alignment at LSalAtl2s4712:3549..3825+ (Lepeophtheirus salmonis)
ATGTTAGATATTAAAGAACCTCCTATGGATTTGCTTTTAATTATTCGAAC
ACTCTGTAAGCTTCGATATGATGGTGGATATTCAAAGAAAGGTAATAGAA
AATTGAAAATTTTAACAAATATTTATTCAAGTGCATAAAATATAATTTCA
CTCAATTTTGAAAAATTTAGTTTCTTTGCCCAATGGGCGTTCAAGAAGAT
TTGGTGACCTAATGTCTCACAAGGAAAATGTTCTAATGGATCCACAGCTG
TATACCATTTTCTATAGGTATAATTAG
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