EMLSAT00000000227, EMLSAT00000000227-696074 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000000227
Unique NameEMLSAT00000000227-696074
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1031supercontigLSalAtl2s1031:39445..42825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000000227 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000000227EMLSAG00000000227-682993Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000001023EMLSAE00000001023-709951Lepeophtheirus salmonisexon
EMLSAE00000001024EMLSAE00000001024-709952Lepeophtheirus salmonisexon
EMLSAE00000001025EMLSAE00000001025-709953Lepeophtheirus salmonisexon
EMLSAE00000001026EMLSAE00000001026-709954Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto770254auto770254Lepeophtheirus salmonispolypeptide
EMLSAP00000000227EMLSAP00000000227Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000000227

>EMLSAP00000000227 ID=EMLSAP00000000227|Name=EMLSAP00000000227|organism=Lepeophtheirus salmonis|type=polypeptide|length=453bp
MDKETGRSGTKGIPKHYFQGGYDYDFVQQLPKRFECPICLLCQRDPHQTS
CGHRFCYSCIITWLNEGRTCPDDNCSLGEGDIFPDSMAHREILQLMITCP
QKDHGCGAVIHLSDVZNHLRSCKYITQERSSKKHENPSRSSDSNTCPSCG
NVLDDHEITQGQGNRLVCPYAIVACPFTSAGCAIKIMRRELQDHIKSQTS
HHVSLLWDKLRKIQQNYDTPSLTTQSSVDETASSSFKEGILSRDSDLRLS
GSNLHSTQKLIKDLFRRVVSLEQKNCQLEIRNEMLQEKLKKVMCSEFEAQ
GRYCNGKFVWKLLDFPELHKKMRTDCHFVVYSKGFYTSVFGYKVCLRSNI
NLVNGEEYLGVFVHLMRGDNDSALSWPFRGQISLTAVREISENFFETIKE
IPEGSKAFERPISERNPTGFGFTEFIRVNALYSGGFINTENTLILKAELF
TMD
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mRNA from alignment at LSalAtl2s1031:39445..42825+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000000227-696074 ID=EMLSAT00000000227-696074|Name=EMLSAT00000000227|organism=Lepeophtheirus salmonis|type=mRNA|length=3381bp|location=Sequence derived from alignment at LSalAtl2s1031:39445..42825+ (Lepeophtheirus salmonis)
TTCTAAGTAAAAGTGTATTTAATAGACCCACAAATCATAACTAAGGAGAA
ATGATCTTGATCATTAGGTAATTTTTAATAGCTAAACACAACTTAAGAAA
ACAATTTCTGGTATTTCCTGTCTCATCGTCCATCAATATACTCACAATGC
ACAGGTATAATAGCTTTCATACAAATGGAATGACTCATTCTTAATATAAT
TTATACAAGTGGATTGTTGTAATAAGATCTACCTTGATAAATGATATATA
TTGAGTTGAAATAAAAGTATAAACAACATTTTTTGTAGGAATGGATAAGG
AAACCGGACGTTCCGGGACTAAAGGAATACCAAAACATTATTTTCAAGGA
GGGTACGACTATGACTTTGTACAACAATTACCCAAGAGATTTGAGTGTCC
AATTTGCTTACTTTGTCAAAGAGATCCACATCAAACAAGTTGTGGTCATC
GTTTTTGCTATTCATGTATCATAACATGGCTTAATGAGGGTAACAAAAAA
AATAGTTATCAATTAGTTAAACATTCACTTTAGTTACAAATAATTATATA
TATTTTTTTAACTTAGGCCGAACATGTCCTGATGATAATTGCAGTCTTGG
AGAAGGTAAAAATAAATTCTCCTAAGCCTTTCGATTTTGTTAAAAAAAAT
ATATATATATCAAATTATAATTCCATAGGAGATATATTCCCCGACTCCAT
GGCTCATCGAGAAATACTTCAACTTATGATCACTTGTCCTCAAAAGGACC
ACGGATGTGGAGCTGTAATTCATCTTTCAGATGTASAAAATCACTTAAGG
TCCTGCAAATATATAACTCAGGAGAGATCATCTAAAAAACATGAAAATCC
TAGTAGATCCTCAGATTCAAACACTTGTCCATCCTGTGGCAATGTATTGG
ATGATCATGAAATAACTCAAGGACAAGGAAACAGACTTGTATGTCCATAC
GCCATAGTAGCATGTCCTTTCACCTCTGCTGGATGTGCTATAAAAATCAT
GAGGCGAGAACTTCAGGATCATATCAAGTCTCAAACATCCCATCACGTGT
CTCTCCTTTGGGATAAACTCCGGAAAATCCAACAAAACTATGACACACCA
AGTCTCACTACACAAAGTTCAGTGGATGAAACTGCATCATCCTCTTTTAA
AGAAGGAATTCTTTCCAGAGACTCGGATCTTAGACTCTCTGGTTCTAATT
TACATTCTACTCAAAAACTGATCAAGGATCTGTTTCGAAGGGTTGTCTCA
CTCGAACAAAAAAATTGTCAACTTGAAATAAGAAATGAGATGCTCCAAGA
AAAGTTAAAAAAAGTGATGTGTTCTGAATTCGAGGCACAGGGGCGCTATT
GTAATGGGAAGTTTGTCTGGAAGCTGTTGGATTTTCCCGAATTGCACAAG
AAAATGAGAACAGACTGCCATTTTGTGGTCTATTCAAAAGGATTTTACAC
GAGTGTTTTTGGCTATAAAGTATGTTTGAGAAGTAATATCAATTTAGTTA
ATGGAGAGGAGTATCTTGGAGTATTTGTACATCTCATGAGAGGAGATAAT
GACAGTGCTCTCTCATGGCCGTTTCGGGGTCAAATCTCCCTCACTGCAGT
GCGTGAAATCAGCGAAAACTTTTTCGAGACCATTAAAGAAATACCAGAGG
GAAGTAAGGCATTTGAAAGGCCAATAAGCGAGAGAAATCCTACAGGATTT
GGATTCACAGAGTTCATCCGCGTGAATGCATTATACTCTGGGGGATTCAT
AAATACAGAAAATACATTGATTTTAAAAGCGGAATTATTCACAATGGATT
AAGATATTGAGAAGCTATTAATTAATTTTTAAAATTCCTKCAGCCATTAG
AAACCATCTTGATACTTTTGCTCATATTTTAAACAATGTGATTAAACTTT
TTTAAACATATCGCATTATGTATGTAAAAATAAAATAATAAATATAATTA
TAATAGAAGCAATACTCCTTAGATAATTTTATAATCCAACTATATTGTAT
AGCACGGGAAATACGTATCTGGAACAGATTGTTGAACATGATAGAGAAAA
AATAAATTCCCTGCCAAACCTTCAAACAACGAATAGGGTCTATCTGGTGT
TGAGCATTTAGGATTCCTAAAGTCCATACACCACTCTGCGAATCGAAGTG
CCATATACATATATTTGGGATCTTGAGTATTTTTATATGCTAATAAAAAA
GAATAACCATTCCCAGAGCTTCCATGACAGAGTCCAAATCCTTTTTTGAG
GAGTCCCCTCTCCCAAATAACATTCAAACACTTTTCTGCCACCTTCAAGT
ATTTTTCATCTTTAAAAGTTTCAAATGCCAAAAGATATAAATCAGAGAAA
CTTGGAGCACCATGACACCAATGAACAAGTTTATCACCNNNNNNNNATTA
GAGCTGGATGTAGATGAAGGGAAATTACCACTTTCGAATTGGAGTTTCCT
TAAGTCGTCTATTTTTGAGCGGATAGTGCTCAAATGAGAAGAACTCATGA
AGGCCTTTGCACGCAAAAGCGTGGATAAAATCCCAGCGTAGCCATGAGCT
CCTCCCAAATACTCTTTTTCATGCCATTCGTATTGGAGTGAGCTGGTTGA
TTTGGAAAGTCCTTTTTTAAAAAGGACTGAGATAATTAATTTAATAACTT
CGTCAATCTGTACAAAGTGTGGATTTTCTTTTTTAACCAGAAGGAGAGCA
AATAGATAGCCCGCCTTTCCGTATAGAAACTCCTCCGGAGCCTCATGGAA
AAGCGTCGAATCCTTTAATTTCAACAGAACTTTCAAGTACTTCTCTTTTT
GATTACCATAAGCAGATGCAAAGGCTAGTGGCCCAACAATCCCACCCAGG
AAACCCAATCTTTTCTTTATACTTTTTGACTCAAGGCATTCCAAGACGTG
ATCCTCATCCACAGTTCTATTCAAAGCCTTAAATAAATACAATATCCCTG
ATAGACCAGTATACACGGAGTAATCCATAAAATCCCTTTCTCGCTTGATA
AAATACGCGTTATCAATTATAGACGTTAATTGGTCCTGAGCTTCTCTGAT
TTTGAKGGCAAGAGCAGAATCTAATTTCAGTCGAAGGTAGCCATTGGATT
CCGAGATTGTATTCGACTCAAGAAATGAGCTAGCTTCGGCCGATTCGTTC
CAGTTTGGAAAAGGATTGTTAAAATATCGTTTCTCATCTCTTCCCCTGCT
GTTGGATGATGACATTTTATGATATGACGTTCTACGTTATTTTCTCTTAT
CAAACAGTCAATGGAGAGAAAATGAGCTCAGTGACTAATTTATGTACATG
TTGTACGGATAATGCTCAAGTAAAATCTATACTTCTTGATAATAATTTAT
AGGTAGATACTAATAAAATAATGCTTATTAA
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