EMLSAT00000003993, EMLSAT00000003993-699840 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000003993
Unique Name	EMLSAT00000003993-699840
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s213	supercontig	LSalAtl2s213:441137..447252 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000003993 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000003993	EMLSAG00000003993-686759	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000017328	EMLSAE00000017328-726256	Lepeophtheirus salmonis	exon
EMLSAE00000017329	EMLSAE00000017329-726257	Lepeophtheirus salmonis	exon
EMLSAE00000017330	EMLSAE00000017330-726258	Lepeophtheirus salmonis	exon
EMLSAE00000017331	EMLSAE00000017331-726259	Lepeophtheirus salmonis	exon
EMLSAE00000017332	EMLSAE00000017332-726260	Lepeophtheirus salmonis	exon
EMLSAE00000017333	EMLSAE00000017333-726261	Lepeophtheirus salmonis	exon
EMLSAE00000017334	EMLSAE00000017334-726262	Lepeophtheirus salmonis	exon
EMLSAE00000017335	EMLSAE00000017335-726263	Lepeophtheirus salmonis	exon
EMLSAE00000017336	EMLSAE00000017336-726264	Lepeophtheirus salmonis	exon
EMLSAE00000017337	EMLSAE00000017337-726265	Lepeophtheirus salmonis	exon
EMLSAE00000017338	EMLSAE00000017338-726266	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto777701	auto777701	Lepeophtheirus salmonis	polypeptide
EMLSAP00000003993	EMLSAP00000003993	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s213:441137..447252-

protein sequence of EMLSAP00000003993

>EMLSAP00000003993 ID=EMLSAP00000003993|Name=EMLSAP00000003993|organism=Lepeophtheirus salmonis|type=polypeptide|length=1484bp
VSICNTTAARKCANGGHCIDGLGEKHFCYCSSGWTGDECKENVDECISNP
CLHEGMCFNGGTCLDGVDDFTCSCPGDYMGRHCECPLDNPDNCINVNESV
SWVVDPSYLTTKYYTFNIETSTPESTEDTLLTTIESSKTLNSQASSEEVF
PTSTMVYSITNSDGIMISPVTSLYIYEKSSSELITKSFLAGDEYVIHTTP
ILAGTTGVIEPTRSISVTSTTQNSNTVQVEQTTSSIAITEVSIEFDNKKY
GASKEDQIVTSLTGLVEGGDDQTQDGQSEAELTTLLTTTTQSSTTTPRKE
ARIETLSTPFTEIEITTLYPYVTNLKEHSTTSSISTTYLLREASSTESIE
TTTLVIDKLETTTTTASDTRTTTLISKELATEEVDYKTTTKDDSNDSGLI
LPVDSTTISSSKDEETLRPEIGSTASGSAHEEEESMARNITYHHTITQED
GILQPFDNRSVEHFNDLICTSNVCSNGGTCLTTLSGVKCICPLQYHGVQC
EEEVFIETPGFVGHSGLVHKLSKNNIVKDRNFHVQLSFRTSQEEGLILFT
GEDVGYLLVSGYIKDGILTFKISCGHQIILFSDPRHRVDXGYLQXLSINI
TIFDTICSTSIQLNETRTMSGDQQIDSLPQIPDMLYMGLVPHKKELGNGI
INVGFQGCMKHLQLNSNELNLYRDAVDGRDIVECKSAICAIQPCRNGAIC
AQHEDSGSWFCDCPPGFTGALCERPVCQTNPCQYGGTCLGSKTGSGFLCL
CQAGRRGSLCEEGNQIQVYIKRLNYKAYEYFLPEVELTQPSFRSSVGGYS
SYLAYPVHTQNVLKSLEWQFHFSTPNTDQVALLFFLGQRGIHDFGSDFIA
LSYIKGHILMTWDLGAGPRRIFTKRPVDERYFVHAVRFGRNGRRGWLQVD
NFPNITGLSPGKREFLNVTSMYYYIGGHENYNFSLLPHDFPVHRGFSGCM
FDMAYRSYVTGQLTPLALPSKIGSSPIRGRNVEQCHYDICSSSPCSNGGT
CIGXGASFLCECTDGRYGITCSEDTSACTTGMHKCAVSSKCTVTLKGSYE
CICPFGKNPLFTGHGSYMQTHLKSAIRFNTHIHIEIRPQTLEGHIIHLGQ
SRNGRHQDFLSLLLVNGSVVFSFSLGGPIGGNVGNTVTIRTCCVEIDKWY
SVEAGRYGRKGYLRXDGQFTTGSTESGLNTLDVDQELFLGGIPNSHMLFI
DFVSKHYYEGCIRNLHINEKSYPLTSTGNHWKGWNIKDCDGTACGGELCQ
NGGKCSLSENIHNHRGYECGCPDNYIGEHCEQHRLCINACENDGICSIGD
DEIIHCDCPLGYHGSFCSDEEEIRVPRFYGDGFISFVLSETKSIRHDQTS
DDYLGVGLKDGMVHLVWNLGWFSRTELTVPSKVNDDKWHRVLIDRIRQEL
KLDVDGKIYQSRVTGSYHELNTVNVVLIGGSSEKDNVQDMTRGHYSMGFN
GCMRNVTIQSSSMDKALKQKSSGIQGRNIDICLV

mRNA from alignment at LSalAtl2s213:441137..447252-

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000003993-699840 ID=EMLSAT00000003993-699840|Name=EMLSAT00000003993|organism=Lepeophtheirus salmonis|type=mRNA|length=6116bp|location=Sequence derived from alignment at LSalAtl2s213:441137..447252- (Lepeophtheirus salmonis)
GTGTCTATTTGCAATACAACTGCCGCTCGGAAATGTGCAAATGGAGGGCA
TTGCATTGATGGACTCGGAGAAAAACACTTTTGCTATTGTTCGTCTGGTA
AGATGAGAAACATTTATATTCTGGTTTTATTTATGAATTTCATCACTGAC
ATGATAAAATCCTAGGTTGGACTGGAGATGAATGTAAGGAGAATGTTGAC
GAGTGTATAAGTAATCCATGTCTACATGAAGGCATGTGTATGGATMCTCC
GGGGGCCTATATATGCAGCTGCCAATTTGGTAAATTAGTTATTTTTTCTA
TAAAATTATGTGAGATAGTTGAATCTATGTATATATTTGCGAAGAGTAGG
TTTTACTGGAATCCATTGTGAAATACAGCTGGAACCTTGTAGAGAGAATC
CTTGTTTGAATGATGCTCTTTGCTTCATGCTAGACCCTGAAACTTTACAA
TGCTACTGTGTTCCTGATTTCCATGGACCAAGATGTGAATACAAATATAA
CGACTGCCTCCTCCCGCCTTTGCCCAAGTAAGTTAACAAACGTAAGCAGT
GAAATTGATTGATCAGTATGTTATAGGTGCTTCAATGGAGGGACGTGCCT
TGATGGTGTGGATGACTTTACATGTTCTTGTCCAGGGGATTATATGGGAA
GGCACTGTGAATGCCCCTTGGATAATCCAGACAACTGTATAAATGTGAAT
GAATCCGTTTCTTGGGTAGTTGATCCGTCTTATCTCACAACGAAATACTA
CACATTTAATATTGAAACATCGACTCCTGAGTCAACGGAAGATACACTGT
TGACTACTATTGAGAGTTCAAAGACTCTAAACTCTCAAGCCAGCTCAGAA
GAAGTATTTCCAACTTCAACCATGGTGTATAGCATCACTAATTCGGATGG
CATCATGATCTCCCCAGTCACATCTCTTTATATATATGAAAAGTCCAGTA
GCGAATTAATAACCAAGAGCTTTTTAGCTGGTGACGAATATGTCATTCAC
ACAACTCCTATCCTGGCGGGAACGACCGGAGTCATTGAACCAACTAGATC
AATCAGTGTAACCTCAACAACGCAAAACTCAAATACAGTCCAAGTGGAAC
AAACAACTTCTTCCATTGCTATTACGGAAGTCAGTATCGAGTTTGATAAC
AAAAAGTATGGGGCCTCAAAGGAAGATCAAATAGTGACGTCTCTCACGGG
TCTGGTTGAAGGTGGAGATGATCAAACACAGGATGGTCAAAGTGAAGCAG
AACTCACTACTCTCTTAACAACGACAACTCAATCTAGTACGACCACTCCA
AGGAAAGAAGCTCGAATAGAAACCCTTTCAACTCCTTTTACAGAGATTGA
GATCACTACATTATATCCATATGTGACGAACTTGAAGGAACATTCGACAA
CATCATCAATAAGTACAACCTATCTGCTAAGAGAAGCAAGTAGTACAGAG
TCTATTGAAACAACAACATTAGTMATTGATAAACTCGAAACAACCACAAC
CACAGCTTCGGATACAAGGACCACAACCCTAATTTCAAAGGAATTAGCAA
CAGAAGAAGTGGACTATAAGACTACAACAAAGGATGATAGTAATGATAGT
GGATTGATTCTCCCCGTTGATTCAACAACGATCTCTTCTTCAAAGGATGA
GGAGACGTTGAGACCAGAGATAGGCTCCACAGCATCAGGATCTGCTCATG
AAGGTGATCATATTTCACAAGNNNNNNNCAACTCCGACCTCATCTTTTAT
AACAGAAGAAGAAAGTATGGCCCGAAACATTACTTATCATCATACCATAA
CACAAGAGGATGGAATACTCCAGCCTTTCGACAATCGCTCTGTAGAACAT
TTTAATGATCTCATCTGCACAAGTAATGTGTGTTCTAATGGTGGAACCTG
TTTGACAACTCTAAGTGGTGTTAAATGTATTTGCCCTCTTCAATACCATG
GGGTTCAATGTGAGGAAGAAGTCTTCATAGAAACCCCTGGATTTGTGGGT
CATTCTGGATTAGTGCATAAATTGTCCAAAAATAATATTGTTAAGGATCG
CAATTTCCATGTACAGCTCAGCTTTAGAACTTCACAAGAGGAAGGATTAA
TCCTCTTTACAGGTAAACATACCTATAACTAATATCCAAAGGCGTAAAAA
TATAAAAAAAATCTCAAATATGGTTATCGCATCATTTATTTTAAGGGTAC
TTACTTTTTGGTTCCAATAACAATAGTTATAATAAGCAGAAAACGAATAA
TAATATATATATATTTTTTTACTTTAATAAAAAAAGTACCTATGGTAAAT
TAAGAATGACCAAATAAATGAAGAGTATTGTCAAGAGATCAGCTCTAATT
AATTATTTTTTAACATTTACAGGTGAAGATGTGGGATATTTATTGGTTTC
AGGATACATCAAGGACGGTATTTTAACCTTTAAAATCAGTTGTGGCCATC
AGATTATTTTGTTCTCGGATCCAAGACATCGAGTGGATAKTGGATATCTC
CAAAYGCTTTCCATTAACATCACCATCTTTGACACAATTTGTTCCACAAG
TATACAACTGAATGAGACTCGCACAATGAGTGGGGATCAGCAAATTGACT
CTCTGCCACAAATACCAGATATGCTCTACATGGGACTCGTTCCGCACAAA
AAAGAGTTGGGAAATGGAATTATTAATGTAGGATTTCAAGGGTGTATGAA
GCATCTCCAAGTAAGGGCCTTTATTCAGATAATAATTGATGACTCAGAGA
GTTTTTATTTTTAGTTAAATTCAAACGAATTAAATTTATATCGGGATGCT
GTGGATGGTCGGGATATTGTAGAATGCAAGTCAGCCATTTGTGCAATTCA
ACCTTGTAGAAATGGAGCCATTTGTGCTCAGCATGAAGATAGTGGATCCT
GGTTTTGTGATTGTCCTCCTGGTTTTACTGGAGCACTATGTGAAAGACCG
GTTTGTCAAACAAATCCATGTCAGTACGGAGGGACTTGCTTAGGAAGTAA
AACAGGATCCGGATTTCTGTGCTTATGTCAGGCTGGACGGAGGGGATCTC
TCTGTGAGGAAGGMAATCAAATTCAAGTTTATATCAAACGACTCAACTAT
AAAGCATATGAATATTTTCTTCCAGAGGTTGAATTAACCCAGCCCTCATT
TAGAAGCTCTGTCGGTGGATATTCTTCTTATCTGGCATATCCAGTCCACA
CCCAAAACGTTTTAAAGTCATTAGAATGGCAATTTCATTTTTCAACTCCA
AACACAGATCAAGTCGCTCTTTTGTTCTTCCTAGGACAAAGAGGGATTCA
TGACTTTGGCTCGGATTTCATTGCTTTGAGCTACATCAAAGGACATATTC
TCATGACATGGGATTTAGGGGCAGGACCTCGACGAATCTTCACAAAAAGA
CCCGTAGATGAGAGATATTTTGTGCATGCCGTACGTTTTGGAAGAAATGG
TAGAAGAGGATGGCTTCAAGTGGATAATTTCCCAAATATAACGGGATTGT
CTCCAGGAAAACGAGAATTCTTGAACGTTACCTCTATGTACTACTACATT
GGGGGACATGAAAACTACAACTTCAGTTTATTGCCTCATGATTTCCCTGT
ACATCGAGGTTTCTCGGGCTGTATGTTTGATATGGCGTATCGCTCTTACG
TAACAGGGCAGTTAACCCCACTAGCACTCCCTTCAAAAATAGGATCTAGC
CCTATCCGTGGTCGAAATGTAGAGCAATGTCACTATGATATTTGCTCAAG
TTCACCTTGTTCCAATGGTGGAACTTGTATCGGCTAWGGAGCCTCTTTTC
TGTAATATATTTCTCTAAAATATGGGTATCCCCTTGGTCATAGGTCTTAT
ATCTTTGTAGGTGTGAATGCACGGATGGTCGATATGGAATAACATGCTCA
GAGGATACCTCAGCATGCACAACGGGAATGCACAAATGTGCAGTCAGCTC
TAAATGCACAGTGACATTGAAGGGCTCTTATGAGTGCATTTGCCCTTTTG
GAAAGAGTGGAAAATATTGTGACCAAGGCAAGTAGGAAGAAGTCACATGA
TTAATTATTAATTATTATTGAACTTATTTGTTCCTAATGGACTCTTCCCA
TTAGTGTATGTACCTATCATTTTTTTTACTTTAATGAGGTTGATGAACTT
CTGTTAAACCGATGAAAATCAGAGCATACACTATCTAATAGTCAATAAAG
TAATACACCTTGACAAAAAAGAATACAAATTGTATTAAAATAGGTCTAGA
TCTTGGTTGTTTGTATACAAAAATGGTGTTCAAACAACCATGTATACCCT
ACTTAAGGGGAGCTCGTGTTATAGAAAAATGATGATTTTATCTGATCATG
TTCTAATGTCTCCATCTTTATTTTATTTTTTTCTTCACTTNTTTTTCTTC
ACTTATACGTGTAAAAAAAAAAAAKAAKAAKAAAAWAAAYACTTTTCCCT
TMTTTAWTTRTGTCTRTTWTTTTTCCAACCCCCRCCCATCATCATTTAGA
TTTAATCGTCTCAGATCCCCTATTTACTGGCCATGGATCCTATATGCAAA
CACATCTCAAATCTGCAATCCGCTTCAATACCCATATACACATCGAAATC
CGTCCGCAGACCCTTGAGGGTCATATCATACACTTAGGCCAATCTCGAAA
CGGTAGACATCAGGACTTTTTATCACTACTACTTGTGAATGGCTCAGTGG
TCTTTAGCTTCAGTTTGGGTGGACCCATTGGGGGTAATGTAGGGAACACG
GTCACTATTCGAACTTGCTGCGTAGAAATTGACAAATGGTACTCGGTTGA
GGCTGGMCGCTATGGAAGAAAGGGCTATTTGAGGMTGGATGGACAATTCA
CTACAGGTTCTACGGAGTCTGGGCTAAATACCCTGGATGTTGACCAGGAA
TTATTCCTTGGAGGTATTCCAAATTCTCATATGTTGTTTATAGATTTTGT
GAGTAAACACTACTATGAGGGTTGCATTCGTAATCTACACATCAATGAGA
AAAGCTATCCACTCACTAGTACGGGGAATCATTGGAAAGGCTGGAACATT
AAGGACTGTGATGGAACGGCTTGTGGAGGAGAACTCTGTCAGAATGGAGG
AAAGTGTTCACTGAGTGAAAATATTCACAATCACAGAGGATACGAATGCG
GTTGTCCGGATAACTATATCGGAGAACACTGTGAGCAACATCGACTCTGC
ATTAACGCCTGCGAAAACGATGGGATATGTAGTATAGGGGATGATGAAAT
CATTCATTGTGATTGTCCGCTGGGGTATCACGGATCTTTTTGTAGTGATG
GTGAGGGTCATACATATGTTAGCATATTCCCTTTGTATCTAACCTAAATA
GTTATTTTCTAGAGGAGGAAATCCGGGTTCCGCGATTCTATGGCGATGGC
TTCATTAGTTTTGTCCTCTCTGAAACAAAGTCAATACGACACGTCKCCTC
CGTTGGCCTCTCTTTCAAAACAAAAGAAGCCCATGGGATGCTCCTGTGGC
TCSGACAGGTTTGACAATTCATTATTTTWTTCAACCCCCAAAAATATGTA
ATATATATGTTTGAAGGATCAAACATCAGATGATTATTTGGGAGTAGGTC
TCAAAGATGGAATGGTTCACCTCGTATGGAACTTGGGATGGTTTTCCAGA
ACGGAATTGACGGTTCCATCCAAAGTAAATGATGACAAATGGCATCGGGT
CTTGATTGATCGTATACGACAGGAATTAAAACTGGATGTGGATGGGAAAA
TCTATCAGAGTCGTGTAACAGGGAGTTATCATGAGCTGAACACAGTGAAT
GTCGTTCTCATAGGTAGTAATATTGTTTTTTCTTCTTATTTTTAGGGGGG
CTCATTTAAAATGAAATGGGCAAAATGCATTTTTGACTCCTCCGTCGTCT
TGTAGTGTGTGTTTTTCATTTTATTTTTTTATTATTTCATTTGAAATAGG
TGGGTCCTCTGAGAAAGATAACGTACAGGATATGACGAGAGGTCATTATT
CTATGGGCTTTAATGGATGCATGAGAAATGTAACTATTCAGTCATCATCC
ATGGATAAGGCATTGAAACAAAAATCATCTGGGATTCAGGGTAGAAATAT
TGACATTTGCTTAGTG

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