EMLSAT00000004703, EMLSAT00000004703-700550 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000004703
Unique Name	EMLSAT00000004703-700550
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s247	supercontig	LSalAtl2s247:304092..309592 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000004703 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000004703	EMLSAG00000004703-687469	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000020532	EMLSAE00000020532-729460	Lepeophtheirus salmonis	exon
EMLSAE00000020533	EMLSAE00000020533-729461	Lepeophtheirus salmonis	exon
EMLSAE00000020534	EMLSAE00000020534-729462	Lepeophtheirus salmonis	exon
EMLSAE00000020535	EMLSAE00000020535-729463	Lepeophtheirus salmonis	exon
EMLSAE00000020536	EMLSAE00000020536-729464	Lepeophtheirus salmonis	exon
EMLSAE00000020537	EMLSAE00000020537-729465	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto776121	auto776121	Lepeophtheirus salmonis	polypeptide
EMLSAP00000004703	EMLSAP00000004703	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s247:304092..309592+

protein sequence of EMLSAP00000004703

>EMLSAP00000004703 ID=EMLSAP00000004703|Name=EMLSAP00000004703|organism=Lepeophtheirus salmonis|type=polypeptide|length=320bp
MEEEIREIIETDSWKETYKQICIAAQLDKDFTSLKACAAENRCLNRYGDV
HPYDHSRVVLHIKNGRSDYINASLVRNERAKRRYILAQGPLDLTIGHFWS
MVWHENSKAILMLNKLMEKGIKKCEQYWPPHPGDSFICKDVNIKVENLQS
ESRNDYILTNLRITNLAVNEERMVLHFQYIAWPDFGVPRCPDTFLNFLQA
VRQTGSLEEDVGPPVVHCSADLRTYRMGLIQTWEQLKFSYLAIVSGAKRD
NQLSQDFLNDVIKPAPQPKDPNSSVILKRQRSFNEDSKKNAKSQKKEQEL
KSSSSEESTSEDNEXVKIKV

mRNA from alignment at LSalAtl2s247:304092..309592+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000004703-700550 ID=EMLSAT00000004703-700550|Name=EMLSAT00000004703|organism=Lepeophtheirus salmonis|type=mRNA|length=5501bp|location=Sequence derived from alignment at LSalAtl2s247:304092..309592+ (Lepeophtheirus salmonis)
TTGCACTCTCGTCAAGTAACAAAAAAGAACGCGTTCCATTTGAACTTCTG
TGTTCCCTGACTAGTATTAGTAAGTAGTAAAGTAACTACTCATCCAGGGG
GGAAAGGAGAAGAAGAAAAAGAAACACGAAGAGACAGAGAGAAACAGTAA
AAGATCTTTTACTATTAATTTATTTGTGAGGGAGTTGTGAAGAATCTGAC
GATGATGAGAGGGAAATATTGATGCTTGGCTAAAAGAGTGTATCTCTGAG
TGCTCAAGGATGGAAGAAGAAATACGGGAGATAATTGAGACCGACTCCTG
GAAGGAGACCTACAAGGTAATGCAGGCTGGGAGTGAGTAGAGTCTGAGAA
GGATCGAGAGAATGCTGTTTTATGACGTCATTGAGTCACGTGATTTTATT
ATTAGGCTAATATAATTCAATTGACTTCTAATTATTATTATGATTGTGAT
TATAGCAAATTTGCATCGCCGCTCAACTGGATAAAGACTTTACTAGTTTG
AAGGCCTGTGCCGCGGAGAATCGCTGTTTAAACCGCTATGGAGATGTTCA
CCCCTACGATCACAGCCGGGTAGTTCTTCACATCAAAAATGGACGAAGTG
ATTATATCAATGCATCATTAGTACGGAATGAAAGGGCTAAACGACGCTAT
ATCCTTGCTCAAGGACCTTTGGACTTGACCATTGGGCACTTTTGGTCCAT
GGTGTGGCATGAAAATAGTAAAGCCATTCTTATGCTTAATAAATTGATGG
AGAAAGGAATTAAAAAGTGTGAACAATATTGGCCTCCACACCCCGGAGAT
TCATTCATTTGTAAAGATGTTAATATCAAAGTTGAAAATCTTCAGTCTGA
GTCACGCAACGACTACATCCTCACTAATTTACGGTTATTTTTCAATATTT
TCTTAAAATCATTCATCGATCATATTATGGATTCTATTAAACCAATCCTA
TACCGTTATGATTTTTAATGGACCGAACTAATTAAATCCCGTTGTCTAGA
CGGGTCTCAAATAAAAACTCTGCCCAGATTGGTCTCAAATAAAAATTCTG
TCTGGATCGATCTTACACAATGATCGGTATCATTTAAGATTCCGTGAAGA
TAGATTCTGAAGATGAATAGTTAATTACGTCAGTTGTTTCAAAATTGTGA
ACACCGGCACTATAACTTTATATGAAGTGAAATGTGTTGCATTATCATTA
ATCAGGAAGGGGAGGCAATAGGTTAACTGACCAATAAAGTCCCCCCCCCC
CCCAAAAAAAAACACGATATTTTTGGACCAAAAAAATCGGACCACAATTA
GATAACGATTAAATTTCGGTCTACGGTCTGAAATTGAGATTTGAACCAAA
ATATTATTGGTCCGAATTGGCCCAGAAAAAAAATCTGGTATTGCACCGAG
TTTCATCACTTCTAACTACGTATATAGTGATTAAAAGAGCGAAATGGCCT
CAAATGCAGTTCTGTCGAACACTGTTGGGACATATACGCTTCGTTCATTT
TGGTCCCGAATAAATTAGTGTTGTTCAGTACACTGGACCTATAGTGATAC
TGCAGTACTTATGCATATAAAACGGTACTATATTAAACTGATATTGGGTC
TGGTACGTGTAGCTTCACTATGCCATTTAAAAGGATGYCCCTCCGATGAA
GTAAACTTCCTAATTTCTGACCCCTCTTCCCACCACTAAATTGTCCTATA
TGAAAAAAAAATATATATATATATGTCTAAATATTTCCTTTTGTAAAAGA
AGTAATTGCATTTATGACCCCAGACAAAAGTTCTGCGGATGCCCCTCATA
GTGCATTTCCATCGCCGTTAACGACATTTTTCTTTTTAGTAGAAAAAGTA
TCAAAATGTACCGAAACCTAAGGTTACTGGAAACTCTATTTTAGTGTTTA
TTTTTAATTCGATGGCGGATTTCTTTAATCCGCGCACATTTTCTTGGTCC
CTTGAGATTCGGCTTTAATGGACCCTACATTATTAGTATTATAATTTTGA
GATATGGGCGATGAAGAAATATATTGTTAAATCAGTATATTTCATTTTTG
TGACTAAGATTTTACAAATACCTTATTTTGACTAGCTACACTTTTATTCT
GAGCCCAGAATTTATAATATGCACGCTGTTTGTATGTTCAAATAGTTCTT
TACTCCTTGTTTGATTAAGAACATGATTTTGGTTCACACTTTATAGTACA
TAGTTAAATCAGCATAATCAAATCTCATTTTGACGTATTGTATTAATAAA
ATTGCAGGATAACCAATCTTGCCGTAAATGAAGAAAGGATGGTTCTACAT
TTTCAATATATAGCGTGGCCGGATTTTGGAGTTCCACGATGTCCAGATAC
TTTTCTTAATTTTTTACAGGCAGTTCGACAAACAGGTAGTTTAGAAGAAG
ATGTTGGACCTCCTGTAGTACATTGCTCTGCTGGTATTGGAAGATCAGGC
ACCTTTTGCCTTGTTGATACTTCTTTAGTCTTAGTGAGTAGTATTGATAT
ATTTATAGTGCTGGATTCGAGTATTGATCGAACTCAGGAAACAAACAAAG
ACTTCACCAAGCCCACAATATGCAAGTTACGCGAACTCACCAGATTTTTT
TTTTTTTTCAATTCTACTTTATTTGAATTCGAATAATAAATATAAGGTTA
TGTATTCGAGTTGTGATAAGTCAAATATCTATGATCACTCAAAAGAACAG
TAAAAAACCATTCTTTTATTAAAAAAGAAAATTTGATGTATTAAAAAGGA
GAAACTATATAGGTGGAAATTCTCAAAAACTCGAATTCAAAATTTTTGAC
TCGAATCCAACACTAAATATGTATTTATAACTTCAGCTTTTCCTTAATTT
ATTTATTTCTAAATTTTAATTAACTATTTAATTTGTTTCATTAAAGATTG
CCAAAGAAGGGCCCTCGTCTGTTATATTAAAAGACATTTTGTTAGACCTA
CGCACATATCGTATGGGTTTAATACAAACATGGGAACAGTTAAAATTTAG
CTACCTCGCTATTGTATCTGGAGCCAAAAGAGATAATCAACTATCACAGG
ATTTTCTTAATGGTAAGAACTCATTTAAAAATAAATCAGCTATTAAGTGG
ATCGATTTTAGTTATTACGACCTATTATTTTAAGAATGTCAACTCGATAA
GGGTTATTGTTGTTAACGTTAGAAATGAATGGTTAAATAATTACTGTGGA
ATGGATTTATGGTATTAACGTTATTTAAACACTTTTTTCCCCTAAAACAA
AGAATTTCGTAAATCTGGCTTGAGGTTTTTACTTTTTGACATTATTTTTA
TCTTCATTTAACCATTAATCAAAAGAAATACTATTTAGATAAATTAAATT
TAATATTTTCGTACTTAACTTATATGTAATATATGTAATTTGTAAAATAT
CTAAAGGTTTATTCAAAAATAATAGCTTATTCTTAATTATTAATTTAATT
CAACTTGCTCATGTCATATTGTTCACGTAATATTTATATATACATACATA
AATTAAATGTTGATTCCCAATTTGTTGAAATTAATTCACATTTCTATAAA
AATATTGGTTTTAGTGATTGGTGATATGTTTTGAAAATTCACAAATATTA
CTTTCAGAATATGAAATCATTATAATATGTCACTTTTTGGGTATACATTG
GGTGAAAGGAAGATTTATCTTATTAATATTATCATTATACTTTCTTATCT
TATTATTTAAAAAAAAAATAACCCAATTTCTGCAAAAGTGGAAAATATAG
CATTTAAAAAACCTTTAAAGATTNNNNNTATAATTAAACTATTTTATTCT
ATGTCTTGTTCATAAAAAATTGCTGATAACACTTAATTAAAAAAAATATT
CATCTTCAGAATACCACTTATATTATAATGTAATACAAGGATTATAATCA
TAATAATTTATAAATACCTATATATCTCACTTATGAGACTCGGGCATACA
AAAAAGTTGCTTTGTAAGTCAAAATTAATTCTACATTTATAATCTGAAGA
AATTTCTGCGAAAATAGTTGTTAGGTGTCTCAGTTTGATGTTGATAAATA
TCTTTTTAACCAGATGTGATAAAACCAGCTCCCCAGCCCAAGGATCCAAA
TTCTTCAGTTATTTTGAAAAGGCAAAGGTCTTTCAATGAAGATAGCAAAA
AGAATGCAAAGTCTCAGAAAAAAGAACAGGAATTAAAATCATCTAGCAGT
GAAGAGTCTACCAGCGAGGACAATGAAGKGGTTAAAATCAAAGTTTAAAG
CATTGATGAATGAGTATGGAGGAGGTACTATTAATCAATGTTTGTAATAG
TTTTATATGAATTTTAGATTATCATGAGGAATGAAGAATTTTTCTCCTAT
TATATTATCATCATATTTTAAATTATGCTTACTTTGTATGTTCTTATAAA
ATATTATTATATAATTACTAGCTGTGTTTGTGACTTATTTAATAGTCATT
TGACTGTCCCATTTTCTTGTTAATATGCCCCCATACACAAAAATATTTTC
TGCGTGGGACAATCAAAGAACTGATTGGTAAAGTTTGATAAAATAATGTT
CCTCATTTTTGTTCAACAACCATTATTTTAAATTTTGCTTTTTTATGTTT
GCTAAAACAACGGGAACTGCAAATCATTGTGCACATCTTAGAGCCCTGAA
ATTATAAAAAACAGGGTGCATAATTAGTTTTACTCATAAACCAGCTACTT
AAATATAACTTTTTGACTCCATCATTATATTTTTAACGGTACAACATGTC
TAAAATAGGCCAATTTCACCAAAAATTAAAATGACCGGTACTAGGCAAAA
ATGCCTGAGATGCCTCAAAATTAAGCAAATTCAGATTTTCGATTCTCCCC
AGTAGGAAAAGTTTGTGTGCAGGAAAATTAACAAATATTAATCCGAAACA
GGACAATCTAATGCCCATTTTTAGAAAAACTCGGATAACTTTAAAAGATA
TTCTTCTTCATGATATTCTTACTTACTAAATATATATTATAATCTCGACG
GATATTTATATCTTCCTTTTTCCTTATTTTCAGACACCAAGATTTTCTTT
TCCGTGTTTCAAAGATTTGACCGAATATATCAATTTCCCCCCCTTGATAA
TATTAATAATAATATTAAGTAATAAAATCAGAACTTGTATTTTTTTGGAC
GTATTAAGATCCTTTTTTTAAGTATTTTATCTATTTTTGATAGTTTAAGA
GAAAGTTTATCAAAAAAAAAACATTTTCTTTTTTATGAAAATAGATTTTT
TTTTTCAATTCTAATTAATCATAGAATTTTAATCAAAAATGGAAAAATTA
AGTGTTATTTTAGCTTTTAAGAAAAGTATATGTTTCGTGTATATCATTTT
GAAACATTATTTAAATTTTAAACATTTTAAATGTTTGGACTCTGTATTTA
ACTTTGTTGAATTGATGATGAGGAAGCCTTTTTCTCTCTCTGAATGAATG
TAAAGTGTGTCATTTTTATTTTTGTATTGAATAAATTTGATCATTCTTCT
A

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