EMLSAT00000010263, EMLSAT00000010263-706110 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000010263
Unique NameEMLSAT00000010263-706110
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
AO F359 EMLSAT00000010263 female
  1. PreAdult2
 -Missing-
-Missing- 		16.01.2018 - 09:08
20.02.2018 - 09:08
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s67supercontigLSalAtl2s67:918185..920986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000010263 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000010263EMLSAG00000010263-693029Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000045621EMLSAE00000045621-754549Lepeophtheirus salmonisexon
EMLSAE00000045622EMLSAE00000045622-754550Lepeophtheirus salmonisexon
EMLSAE00000045623EMLSAE00000045623-754551Lepeophtheirus salmonisexon
EMLSAE00000045624EMLSAE00000045624-754552Lepeophtheirus salmonisexon
EMLSAE00000045625EMLSAE00000045625-754553Lepeophtheirus salmonisexon
EMLSAE00000045626EMLSAE00000045626-754554Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto780071auto780071Lepeophtheirus salmonispolypeptide
EMLSAP00000010263EMLSAP00000010263Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000010263

>EMLSAP00000010263 ID=EMLSAP00000010263|Name=EMLSAP00000010263|organism=Lepeophtheirus salmonis|type=polypeptide|length=614bp
MGVEWPQMKWIAXTGXEGNDPMKVKFVGRSEDVEKGRRAXKXXNFKPLSK
EELAEYAKDPFWSKIRWLLFILFWTLWAGMLVVSIIIIVLTPKCPTPKPK
EWWQKAPIYEVYAKSFKDSDGDGLGDLKGVTSKLDYLASLGVGSVWLSPV
YKSPMDDNGYDIADFESIDPTFGSMEDFKELVAEMKKRGLKLIMDLVPNH
SSDQHPWFQKSIEKDGEYTDYYVWRAGDSSTPPNNWLSVFGGSAWSFDER
RGEWYLHQFKKSQPDLNLRNPLVIERLKEVMKFWLNLGVDGYRFDSVAHM
FEXEDFADEPANDASNSDDETAYSSLLHTKTYEQPENLDLLAVFREVLDE
KTAEDETSPRIMMTXAYTDDLNKYYGPNGTISHMPINFNLITAFKDKSTV
SAKALHNAIIPYIAEVKEVNHTWPNFNLGNHDNPRVRSRFGPELIDGINM
VXMLLPGTPITYYGEELGMEDLLEVQNDPRDPERSPMIWNDQENAGFTNG
TPWLKITDNYKSLNAEVQMNDPLSHFSNYKVLAKLRMNDAVLLGSFDPVL
EGDVFGYSRIKKGNPGLVVLVNFGEDNALVDLHERKXXXXXXXXXXXXXX
RRKCLQPRQSCLFQ
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mRNA from alignment at LSalAtl2s67:918185..920986+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000010263-706110 ID=EMLSAT00000010263-706110|Name=EMLSAT00000010263|organism=Lepeophtheirus salmonis|type=mRNA|length=2802bp|location=Sequence derived from alignment at LSalAtl2s67:918185..920986+ (Lepeophtheirus salmonis)
TGATATCTCACAATGTAAGTTTACTGAAAGTGTGCAAAGATAGTATCCAA
TTGAACTTGACAACTGGTCAATATATTTCATACCCTCTATAATAGAAACG
AAACGAATATTTATGATAACACTCATTTTGTCCCTCCTAGAGTGTTAGAG
CAAGTCAAGCAAGTCATTTTTGTGCTACATATGCTAGCCTATGCATATAG
ACTGTTCATACACTAGTTTTTCCCTTAATTTATTTTTATATTATTATGGC
TGGCTACACTTTTTTTGTATGTACACTTGAAAAGTAAAGTTGTAGTTAAA
GGTCGAACGGAAGTTGGAACACAGTGCTCGTTCAATTATCACATTAATAT
TCACGACTGTGATTCTGTTGCAAGTTCGAAATCAATAAATTTGAGGTATT
TAACATTATTATATAAAAATAAAATCCTTTATTCAATGATATTTTTCTAT
CAGAGATGAGCAAGGCAGAAAATGGGGGTGGAATGGCCCCAAATGAAGTG
GATAGCCNTCACAGGGRAWGAAGGSAACGATCCCATGAAGGTTAAATTTG
TTGGYAGGAGTGAGGATGTAGAGAAAGGGCGTAGAGCTCMAAAGGMGWAT
AACTTCAAACCATTGTCTAAAGAAGAATTGGCCGAATATGCCAAAGATCC
CTTTTGGAGTAAAATCCGATGGCTTCTCTTCATTCTATTTTGGACTCTCT
GGGCTGGTATGCTCGTTGTTTCGATAATTATCATTGTTCTTACACCAAAA
TGTCCMACGCCAAAACCAAAGGAATGGTGGCAAAAGGCTCCTATCTATGA
AGTGTACGCAAAATCATTTAAAGATTCAGATGGGGATGGATTGGGAGATC
TCAAGGGTAATATCTATTAATTATATATCTAATTTACGTTGCTATATAAT
TATACATTTTCATAGGTGTTACGTCAAAATTGGATTATTTAGCTAGCTTG
GGCGTTGGCTCGGTTTGGCTATCACCCGTTTACAAATCTCCCATGGACGA
TAATGGTTATGATATAGCTGATTTTGAATCTATCGACCCTACTTTTGGTT
CCATGGAAGATTTCAAGGAGCTTGTCGCTGAAATGAAAAAGAGAGGTCTA
AAACTCATTATGGACCTTGTTCCCAATCATTCGTCTGATCAACATCCATG
GTTTCAAAAGTCTATTGAAAAAGATGGAGAATATACCGATTACTATGTCT
GGAGAGCTGGGGATTCTTCTACACCTCCAAACAACTGGGTAAATAAAAAT
AAAAAGATAATTTGGGTTAATTATAATTTTTTTTAACACTTAGCTCTCCG
TTTTTGGAGGATCTGCTTGGTCCTTTGATGAACGACGTGGAGAGTGGTAT
CTTCATCAATTCAAAAAATCTCAACCAGACTTGAATTTAAGAAATCCACT
CGTCATTGAACGTCTCAAAGAAGTAATGAAGTTTTGGTTAAATTTGGGAG
TTGATGGGTATCGCTTTGATTCTGTTGCCCATATGTTTGAAKCTGAAGAC
TTTGCGGATGAACCTGCCAACGACGCCTCTAATTCTGATGATGAAACAGC
TTATAGTTCTCTCCTCCATACAAAAACCTATGAACAACCTGAAAACTTAG
ATTTGCTTGCTGTATTTAGAGAAGTTTTAGATGAAAAAACTGCTGAAGAT
GAAACTAGTCCAAGGTATACCTTTTACTCCTCGTATATCATATATATTTG
CATTATGTTTTAACTAAATGACACCCTATATTTAGAATTATGATGACTRA
AGCCTATACTGATGATTTGAACAAATACTATGGACCCAATGGAACCATTT
CTCACATGCCAATCAATTTCAATTTAATAACAGCATTCAAAGATAAATCA
ACTGTTTCTGCTAAAGCCTTACATAATGCCATCATTCCATACATTGCAGA
AGTAAAAGAGGTTAATCACACATGGCCTAACTTCAACTTAGGAAATCATG
ATAATCCCAGAGTTAGATCCAGGTATTTGCTCAATTGATATTATGATTGC
CATCTTGAGTCTTTTATCATTCATATTTTTCCCACAGGTTTGGACCAGAG
CTCATCGATGGGATTAATATGGTTGKTATGCTTTTGCCAGGAACACCAAT
TACTTATTATGGGGAAGAATTGGGTATGGAAGATCTTTTAGAAGTTCAAA
ATGATCCAAGAGATCCTGAACGATCACCCATGATTTGGAACGATCAAGAA
AACGCCGGTTTCACAAATGGAACGCCATGGTTAAAGATTACAGATAACTA
CAAATCATTGAATGCTGAAGTTCAAATGAATGACCCATTGTCCCACTTTT
CAAATTATAAAGTACTCGCAAAATTAAGAATGAATGATGCGGTACTATTA
GGATCATTTGATCCTGTTTTGGAAGGTGATGTCTTCGGATACTCCAGGAT
TAAAAAGGGCAATCCTGGTCTAGTAGTATTGGTTAACTTTGGCGAAGATA
ATGCCTTAGTCGATCTGCACGAAAGAAAGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAAGAAGAAAATGTTTACAGCCCAGGCAATC
GTGTTTATTTCAATGATGTCAAACTGGGGCCAAAAGAGGGAATTGTTATC
TCGTTTGTTGCTAAATTTATATAAAAATTTAGAACTAGTTTCTATGAAAT
AAATAATCATCTTATTGCATCGCATAAATGTTGTATAATTATTTTAACTC
AACACTTGGTGTACTGTTGGGGGAAAGTTTACATACGTAACATGAAATAT
TACTTAACTACTTAGATTATGTAAAATATTATAATATTTAACTATCACGA
AG
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