EMLSAT00000011538, EMLSAT00000011538-707385 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000011538
Unique NameEMLSAT00000011538-707385
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s799supercontigLSalAtl2s799:384154..385809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000011538 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000011538EMLSAG00000011538-694304Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000051565EMLSAE00000051565-760493Lepeophtheirus salmonisexon
EMLSAE00000051566EMLSAE00000051566-760494Lepeophtheirus salmonisexon
EMLSAE00000051567EMLSAE00000051567-760495Lepeophtheirus salmonisexon
EMLSAE00000051568EMLSAE00000051568-760496Lepeophtheirus salmonisexon
EMLSAE00000051569EMLSAE00000051569-760497Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto777117auto777117Lepeophtheirus salmonispolypeptide
EMLSAP00000011538EMLSAP00000011538Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000011538

>EMLSAP00000011538 ID=EMLSAP00000011538|Name=EMLSAP00000011538|organism=Lepeophtheirus salmonis|type=polypeptide|length=334bp
MMHSRFLFRHSSLSTRFLSSVTTTTPSTVQKSQKIIIHDESFLPSLNSRL
EDLRMTASFYGSNQPLLKLPTLPRAAPIIDPILHIIKKGDPEYHREILED
PLRHTNNTKIKDPEKKIKKWAHRMLRIRKRKMKVHQRKKRWRKKQRRRLP
VWLIKELLVQDELNKRRELDLQLNMLSKKPLVREGETVDNFIAMAFLTKC
CYCINLRSGVLLYAFTLIVLSALSILLTSMYNEGMAHTAPHIVTILVMLL
LIYGTVKYNTKVILVCIALLSIIILWNIIDAIVITSKFIHEREAVPSIFS
LVVSCFHLYMLYVLKALYDGFIRGNKFDAEESIL
back to top

mRNA from alignment at LSalAtl2s799:384154..385809-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000011538-707385 ID=EMLSAT00000011538-707385|Name=EMLSAT00000011538|organism=Lepeophtheirus salmonis|type=mRNA|length=1656bp|location=Sequence derived from alignment at LSalAtl2s799:384154..385809- (Lepeophtheirus salmonis)
ATGATGCATTCTCGATTTTTATTTCGACATTCGTCTCTATCAACACGCTT TTTATCAAGCGTAACTACAACAACTCCTAGTACTGTACAGAAATCCCAAA AGATCATAATACATGATGAGTCCTTCCTCCCTTCCTTAAATTCTCGATTG GAGGATCTTCGTATGACTGCTTCTTTTTACGGATCGAATCAACCTCTTTT AAAGCTTCCAACTCTCCCAAGAGCGGCTCCTATCATTGATCCTATTCTTC ACATTATTAAAAAAGGTGATCCAGAATACCATCGAGAGATCTTGGAGGAT CCTTTAAGGCACACCAATAACACCAAAATCAAAGATCCAGAAAAAAAGAT TAAAGTATTAAAGTTAATTATATATTTGAAAGGAATAAAGTCAAATTTCA TTGGGTTTATTATTATTATTATTTAGAAATGGGCTCACCGTATGCTTCGT ATCCGGAAACGGAAAATGAAAGTTCACCAAAGGAAGAAGAGATGGCGAAA AAAACAAAGTATTTTACCAAAGTAGGATTTTCAATCGGATTAAAAGCAGA GAAATTGCATTTAGAACTGCTCTCCTTGATAAAATCAAATCTGCTGAGGC CTTTGACCCTGAAAACTATGTCAAAGAGTACCTTGAAGACTATAATACTC CACTCATCCCTTTAACCTATAAAGGAAGGAGACTCCCTGTCTGGCTCATC AAGGAACTACTTGTTCAAGATGAGCTAAATAAGAGAAGAGAATTGGATTT GCAATTGAACATGCTCTCAAAGAAGCCCCTTGTTCGAGAAGGGGAAACAG TTGATAACTTTGTTAAGAGAATACAACCAGAGCTAGATCTATATAAAGTT TAGGAAACCGACATGCAAGTTCCTTTAAATTTTCTTTCTACATCTATCAC ATAAATAAAGTCAGTCACACTACATGTTTTGATAAATCCGTAATACAGAA TAATTAATAGGTTTATTTATATTATATAAATATGTATTATAATATTTCGT AATAAACTTTGAAATTTTGTTAACCGGGAATGAAAAGTAGTATATAATTT TATTTTCTTACGTTTTTTTTCATCCGTTATTATACCGAAATTTTCTTAAC CGTGAAATTGAATATTTGTGATTCAGCAGCTATTTGAAATCTATTTCCAA TAGATAGCCATGGCTTTCCTAACTAAATGTTGTTATTGTATTAATCTAAG ATCTGGGGTTTTACTCTACGCATTCACCCTCATAGTCCTTTCCGCTCTTT CCATTTTACTCACTTCGATGTACAACGAAGGAATGGCACATACGGCACCT CACATTGTAACTATACTAGTCATGTTATTGCTAATATATGGAACGGTGAA GTACAATACTAAAGTTATTTTGGTATGCATCGCTTTACTCTCCATCATAA TTCTTTGGAATATCATTGACGCCATCGTGATAACATCAAAGTTTATTCAT GAAAGAGAAGCTGTCCCATCAATATTTAGTTTAGTCGTATCATGTAAGTT ACACATATTGTAATTTCCTAATAAAGCAGATCTACTATAACTTATATGTA TATTCCAATAACAGGTTTTCATCTGTATATGCTATACGTACTCAAGGCAC TTTATGATGGGTTCATTCGGGGAAATAAATTTGATGCTGAAGAGTCCATA TTGTAA
back to top
Add to Basket