39s ribosomal protein mitochondrial, snap_masked-scaffold934_size79169-processed-gene-0.11 (gene) Tigriopus kingsejongensis

Overview
Name39s ribosomal protein mitochondrial
Unique Namesnap_masked-scaffold934_size79169-processed-gene-0.11
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Match: EMLSAG00000004418 (supercontig:LSalAtl2s:LSalAtl2s231:1239661:1249862:1 gene:EMLSAG00000004418 transcript:EMLSAT00000004418 description:"maker-LSalAtl2s231-augustus-gene-12.38")

HSP 1 Score: 275.404 bits (703), Expect = 7.586e-87
Identity = 119/181 (65.75%), Postives = 147/181 (81.22%), Query Frame = 0 
Query:    1 MSKFQRVQQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDDVVPPEILRNVSAQIPQVRTVPKRLQEFSSQEVEEYPKLWDYPEAHV 181
            MS FQRVQQWSTFAR+W I+DA+ QNPF SAK +T+ ++G HKPI+    DCGDHV+VINSR VAL+GREWQ RVYFHHTGFP+  + GGA+WIPAW+ H RDPT V WKACYNNLYGDL RKG MARLHV+PD+ VP E+L NVS  IP+++  PK+L E+S++E++ +P LWDYP+  V
Sbjct:    1 MSAFQRVQQWSTFARNWHIFDAKRQNPFASAKVITKYLEGKHKPIHHALNDCGDHVIVINSRHVALLGREWQFRVYFHHTGFPQKRYNGGAKWIPAWQXHERDPTXVLWKACYNNLYGDLTRKGKMARLHVFPDEEVPDELLNNVSGMIPRIKDAPKKLSEYSAEEIQAFPSLWDYPKDFV 181
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BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|31340372|sp|Q9VJ38.2|RM13_DROME (RecName: Full=39S ribosomal protein L13, mitochondrial; Short=L13mt; Short=MRP-L13)

HSP 1 Score: 213.772 bits (543), Expect = 2.388e-70
Identity = 98/183 (53.55%), Postives = 131/183 (71.58%), Query Frame = 0 
Query:    1 MSKFQRVQQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDDVVPPEILRNVSAQIPQVRTVPKRLQEFSSQEVEEYPKLWDYPEAHVIR 183
            MS  +RVQQW+TFAR+W IYD  WQNPF SAK V   + G+ KPIY P  DCGDHVV+IN+R++AL G EW  RVYFHHTG+P     GGA W  AW+LH +DPT+V  KA YN++ G+L+R+  M RLH++ DD VP EIL+NV+ QI   R++P+RL     + +E +P + DYP+ +++R
Sbjct:    1 MSIAKRVQQWATFARTWHIYDCTWQNPFESAKLVKTHLLGLQKPIYHPMNDCGDHVVLINTREIALPGDEWVKRVYFHHTGYP-----GGASWTLAWQLHEKDPTMVMKKAVYNSMRGNLQRRHTMQRLHLFADDQVPEEILQNVTNQIRTPRSIPQRLDHIDKETLENFPNIMDYPKDYILR 178
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BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|22257023|sp|Q9BYD1.1|RM13_HUMAN (RecName: Full=39S ribosomal protein L13, mitochondrial; Short=L13mt; Short=MRP-L13; AltName: Full=Mitochondrial large ribosomal subunit protein uL13m)

HSP 1 Score: 172.94 bits (437), Expect = 3.690e-54
Identity = 78/179 (43.58%), Postives = 117/179 (65.36%), Query Frame = 0 
Query:    1 MSKFQRV-QQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDDVVPPEILRNVSAQIPQVRTVPKRLQEFSSQEVEEYPKLWDYPE 178
            MS F R  QQW+TFAR W++ D + Q P   A   +  +QG+HKP+Y   +DCGDHVV++N+R +A  G +W+ +VY  HTG+P     GG R + A +LH RDP  +   A Y  L  +L R+  M RLH++PD+ +P +IL+N+  ++PQ R +PKRL E++ +E++ +P+LW  PE
Sbjct:    1 MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYP-----GGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQPRKIPKRLDEYTQEEIDAFPRLWTPPE 174
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BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|22257024|sp|Q9D1P0.1|RM13_MOUSE (RecName: Full=39S ribosomal protein L13, mitochondrial; Short=L13mt; Short=MRP-L13)

HSP 1 Score: 168.703 bits (426), Expect = 1.772e-52
Identity = 77/179 (43.02%), Postives = 117/179 (65.36%), Query Frame = 0 
Query:    1 MSKFQRV-QQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDDVVPPEILRNVSAQIPQVRTVPKRLQEFSSQEVEEYPKLWDYPE 178
            MS F R  QQW+TFAR W++ D + Q P   A   +  +QG++KP+Y   +DCGDHVV+IN+R +A  G +W+ +VY  HTG+P     GG R + A +LH +DP  +   A Y  L  +L R+  M RLH++PD+ +P +IL+N+  ++PQ R VPKRL E++ +E+E +P++W  P+
Sbjct:    1 MSSFSRAPQQWATFARMWYLLDGKMQPPGKLAVIASNKLQGLNKPVYHQLSDCGDHVVIINTRHIAFSGNKWEQKVYSSHTGYP-----GGFRQVTAAQLHRKDPVAIVKLAIYGMLPKNLHRRTMMQRLHLFPDEDIPEDILKNLVEELPQPRRVPKRLDEYTQEEIEAFPRVWTPPD 174
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BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|91207746|sp|Q3SYS1.1|RM13_BOVIN (RecName: Full=39S ribosomal protein L13, mitochondrial; Short=L13mt; Short=MRP-L13)

HSP 1 Score: 167.933 bits (424), Expect = 2.653e-52
Identity = 74/179 (41.34%), Postives = 117/179 (65.36%), Query Frame = 0 
Query:    1 MSKFQRV-QQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDDVVPPEILRNVSAQIPQVRTVPKRLQEFSSQEVEEYPKLWDYPE 178
            M+   R  QQW+TFAR W++ D + Q P   A   +  +QG+HKP+Y   +DCGDHVV++N+R +A  G +W+ +VY  HTG+P     GG + + A +LH +DP  +   A Y  L  +L R+  M RLH++PD+ +P +IL+N++ ++PQ R VP+RL E++ +E+E +P++W  PE
Sbjct:    1 MASLSRAPQQWATFARVWYLLDGKMQPPGKLAALASVRLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYP-----GGFKQVTAAQLHRKDPVAIVKLAIYGMLPKNLHRRTLMQRLHLFPDEDIPEDILKNLTEELPQPRKVPRRLDEYTQEEIEAFPRVWSPPE 174
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BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|226702847|sp|B5YDX6.1|RL13_DICT6 (RecName: Full=50S ribosomal protein L13)

HSP 1 Score: 92.0485 bits (227), Expect = 6.327e-23
Identity = 43/119 (36.13%), Postives = 73/119 (61.34%), Query Frame = 0 
Query:   15 RSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNL-YGDLKRKGFMARLHVY 132
            R W++ DA+ +     A ++ ++++G HKPIY+P+ D GD V+V+N++DV L G++ Q ++YF H+G+P     GG R I A ++ ++ P  + + A    L  G L RK  + +L VY
Sbjct:   13 REWYVVDAKGKVLGRLASEIAKILRGKHKPIYTPHVDTGDFVIVVNAKDVVLTGKKEQQKIYFFHSGYP-----GGHRLISAKDMRAKSPEKMIYLAVKGMLPKGPLGRK-MLKKLKVY 125
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BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|226702848|sp|B8E1G6.1|RL13_DICTD (RecName: Full=50S ribosomal protein L13)

HSP 1 Score: 88.9669 bits (219), Expect = 8.237e-22
Identity = 41/119 (34.45%), Postives = 72/119 (60.50%), Query Frame = 0 
Query:   15 RSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNL-YGDLKRKGFMARLHVY 132
            R W++ DA+ +     A ++ ++++G HKPIY+P+ D GD V+V+N++DV L G++   ++YF H+G+P     GG R I A ++ ++ P  + + A    L  G L RK  + +L +Y
Sbjct:   13 REWYVVDAKGKVLGRLASEIAKILRGKHKPIYTPHVDTGDFVIVVNAKDVVLTGKKEDQKIYFFHSGYP-----GGHRLITARDMRAKSPEKMIYLAVKGMLPKGPLGRK-MLKKLKIY 125
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BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|81678467|sp|Q5R0K6.1|RL13_IDILO (RecName: Full=50S ribosomal protein L13)

HSP 1 Score: 86.2705 bits (212), Expect = 9.192e-21
Identity = 47/127 (37.01%), Postives = 72/127 (56.69%), Query Frame = 0 
Query:    7 VQQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNL-YGDLKRKGFMARLHVY 132
            V +  T  R W++ DA+ +     A ++ R ++G HKP Y+P+ D GD++VVIN+  VA+ G + Q ++Y+ HTGFP     GG + I   +L ++ P +V  KA    L  G L R  F  +L VY
Sbjct:    5 VAKPETVKRDWYVVDAEGKTLGRLATEIARRLRGKHKPEYTPHVDTGDYIVVINAEKVAVTGNKAQGKMYYSHTGFP-----GGIKSISFEKLIAKKPEMVIQKAVKGMLPRGPLGRAMFR-KLKVY 125
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BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|118573455|sp|Q2LPM2.1|RL13_SYNAS (RecName: Full=50S ribosomal protein L13)

HSP 1 Score: 83.9593 bits (206), Expect = 6.313e-20
Identity = 40/125 (32.00%), Postives = 69/125 (55.20%), Query Frame = 0 
Query:   11 STFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDD 135
            S  AR W++ DA+ Q     A ++ R ++G HKP Y+P+ D GD +VV+N+  + L G++ + ++Y+HH+G+P     GG +   A ++    PT V W A    L  +   +  + +L VY  +
Sbjct:    9 SEVAREWYLIDAEGQVLGRMASEIARRLRGKHKPEYTPHVDTGDFIVVVNAEKMVLTGKKLRDKIYYHHSGYP-----GGLKEKTAGKMMQEKPTDVLWLAVKGMLPKNSLGRRMLRKLKVYAGN 128
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BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|189040990|sp|A9NEI3.1|RL13_ACHLI (RecName: Full=50S ribosomal protein L13)

HSP 1 Score: 83.1889 bits (204), Expect = 1.393e-19
Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = 0 
Query:   11 STFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKAC-----YNNLYGDLKRKGFM 126
            ST  R W++ DA+ +     A  V  V++G HKP Y+P+ D GD+V+VIN+  + L G +W  ++Y+ H+G     ++ G    PA EL  + PT +  KA      + +L  D+ RK F+
Sbjct:    9 STIQRKWYVVDAEGKTLGRLATVVASVLKGKHKPTYTPHVDSGDYVIVINAEKIKLTGNKWNDKIYYKHSG-----YESGLTETPAKELVVKKPTALVEKAVKGMIPHTSLGRDMFRKLFV 124
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BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|254798503|sp|B9E9M3.1|RL13_MACCJ (RecName: Full=50S ribosomal protein L13)

HSP 1 Score: 82.4185 bits (202), Expect = 3.104e-19
Identity = 40/123 (32.52%), Postives = 68/123 (55.28%), Query Frame = 0 
Query:   11 STFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNL-YGDLKRKGFMARLHVY 132
            S   R W++ DA+ +     + +V  +++G HKP ++P+ DCGDHV++IN+  + L G + + ++Y+ H+  P     GG + I A EL  ++P  +   +    L  G L  K F  +LHVY
Sbjct:   10 SNIDRKWYVIDAEGKTMGRLSSEVASILRGKHKPTFTPHVDCGDHVILINAEKIYLSGNKAEDKIYYRHSNHP-----GGIKSISAGELREKNPVRLMETSIKGMLPKGSLGDKMF-KKLHVY 126
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BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|290561136|gb|ADD37970.1| (39S ribosomal protein L13, mitochondrial [Lepeophtheirus salmonis])

HSP 1 Score: 273.478 bits (698), Expect = 3.037e-91
Identity = 120/181 (66.30%), Postives = 149/181 (82.32%), Query Frame = 0 
Query:    1 MSKFQRVQQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDDVVPPEILRNVSAQIPQVRTVPKRLQEFSSQEVEEYPKLWDYPEAHV 181
            MS FQRVQQWSTFAR+W I+DA+ QNPF SAK +T+ ++G HKPI+    DCGDHV+VINSR VAL+GREWQ RVYFHHTGFP+  + GGA+WIPAW++H RDPTLV WKACYNNLYGDL RKG MARLHV+PD+ VP E+L NVS  IP+++  PK+L E+S++E++ +P LWDYP+  V
Sbjct:    1 MSAFQRVQQWSTFARNWHIFDAKRQNPFASAKVITKYLEGKHKPIHHALNDCGDHVIVINSRHVALLGREWQFRVYFHHTGFPQKRYNGGAKWIPAWQVHERDPTLVLWKACYNNLYGDLTRKGKMARLHVFPDEEVPDELLNNVSGMIPRIKDAPKKLSEYSAEEIQAFPSLWDYPKDFV 181
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BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|225709584|gb|ACO10638.1| (39S ribosomal protein L13, mitochondrial [Caligus rogercresseyi])

HSP 1 Score: 265.003 bits (676), Expect = 1.108e-87
Identity = 117/181 (64.64%), Postives = 147/181 (81.22%), Query Frame = 0 
Query:    1 MSKFQRVQQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDDVVPPEILRNVSAQIPQVRTVPKRLQEFSSQEVEEYPKLWDYPEAHV 181
            MS FQRVQQWSTFARSW ++DA+ QNPF SAK +T  ++G HKPI+    D GDHV+V+NSR +ALMGREWQ+RVYFHHTGFPK  + GGARWIPAW++H RDPTLV WKACY+NLYGDL RKG MARLHV+PD+ VP E+L N S  IP+++ VPK+L E+S +E++ +P+LW + E +V
Sbjct:    1 MSAFQRVQQWSTFARSWHVFDAKRQNPFASAKIITNYLEGKHKPIHHSMNDPGDHVIVLNSRHIALMGREWQVRVYFHHTGFPKKRYNGGARWIPAWQIHERDPTLVLWKACYSNLYGDLFRKGKMARLHVFPDEEVPEELLSNASNMIPRIKDVPKKLSEYSEEEIKAFPRLWGFQETYV 181
[Close]
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|225718160|gb|ACO14926.1| (39S ribosomal protein L13, mitochondrial [Caligus clemensi])

HSP 1 Score: 259.61 bits (662), Expect = 1.064e-85
Identity = 113/176 (64.20%), Postives = 143/176 (81.25%), Query Frame = 0 
Query:    1 MSKFQRVQQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDDVVPPEILRNVSAQIPQVRTVPKRLQEFSSQEVEEYPKLWDY 176
            MS FQRVQQWSTFAR+W ++DA+ QNPF SAK +T  ++G  KPIY    DCGDHV+V+NSR +ALMGREWQ RVYFHHTG+PK  + GGARW+PAW++H RDPTLV WKA YNNL+GD+ RKG MARLHV+PD+ VP E++ NV+  IP+++ VPK+L E+S  E++ +PKLWDY
Sbjct:    1 MSAFQRVQQWSTFARNWHVFDAKRQNPFASAKVITHHLEGKTKPIYHALNDCGDHVIVLNSRHIALMGREWQYRVYFHHTGYPKKRYNGGARWVPAWQIHERDPTLVLWKAVYNNLHGDITRKGKMARLHVFPDEDVPSELMENVTNMIPRIKDVPKQLSEYSQDEIDAFPKLWDY 176
[Close]
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1325299100|ref|XP_023331570.1| (39S ribosomal protein L13, mitochondrial-like [Eurytemora affinis])

HSP 1 Score: 250.751 bits (639), Expect = 3.147e-82
Identity = 111/187 (59.36%), Postives = 146/187 (78.07%), Query Frame = 0 
Query:    1 MSKFQRVQQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTH----FKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDDVVPPEILRNVSAQIPQVRTVPKRLQEFSSQEVEEYPKLWDYPEAHVIR 183
            MS+F RV+QWSTFAR+W +YDA+WQNPFHSAK +T  ++G +KPIY P  DCGDHVVVINS+ +AL+GREWQ RVYFHHTG+PK H       GA WIPAW+LH RDPTL+ WKACYNNL G+L R   MARLH++P+D VP ++L N+++Q+  +R VP  L ++S ++ +++PK++DYPE  V R
Sbjct:    1 MSRFDRVKQWSTFARTWHLYDAKWQNPFHSAKIITNHLEGKNKPIYHPKNDCGDHVVVINSKHIALLGREWQYRVYFHHTGYPKAHKHSGVTNGALWIPAWQLHDRDPTLILWKACYNNLEGNLTRPKNMARLHIFPEDKVPEDLLENITSQLEPLRPVPATLADYSPEQRDKFPKVFDYPEKFVSR 187
[Close]
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1339058507|ref|XP_023717779.1| (39S ribosomal protein L13, mitochondrial [Cryptotermes secundus])

HSP 1 Score: 230.72 bits (587), Expect = 1.491e-74
Identity = 102/183 (55.74%), Postives = 141/183 (77.05%), Query Frame = 0 
Query:    1 MSKFQRVQQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDDVVPPEILRNVSAQIPQVRTVPKRLQEFSSQEVEEYPKLWDYPEAHVIR 183
            MS ++RVQQW+TFAR W +YDA WQNPF SA+++ + ++G+HKPIY P  DCGDHVVVINSRD+A+ G EW+ RVYFHHTG+P     GGA W PAWE+H +DPT++  KA Y  + G+L+R+  M RLH+YPDD VP  I RN++ Q+ Q+R VPKRL  ++ +EV+++PK+ D+P+ +V+R
Sbjct:    1 MSAYKRVQQWNTFARVWHLYDATWQNPFESAQRIIKFLKGLHKPIYHPLNDCGDHVVVINSRDIAMPGDEWRQRVYFHHTGYP-----GGATWTPAWEVHDKDPTMIVKKAVYTGMDGNLQRRYTMQRLHIYPDDKVPENIKRNITNQLRQLRPVPKRLDHYAPEEVQQFPKVMDWPKDYVLR 178
[Close]
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|817079330|ref|XP_012262076.1| (39S ribosomal protein L13, mitochondrial [Athalia rosae])

HSP 1 Score: 229.565 bits (584), Expect = 5.307e-74
Identity = 103/183 (56.28%), Postives = 136/183 (74.32%), Query Frame = 0 
Query:    1 MSKFQRVQQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDDVVPPEILRNVSAQIPQVRTVPKRLQEFSSQEVEEYPKLWDYPEAHVIR 183
            MS  +R QQW+TF R+W +YDA WQNPF+SA+ + + + G+HKPIY P  DCGDHVVVIN+RD+AL G EW+ RVYFHHTG+P     GGA W  AWELH+++P LV  KA Y ++ G+L+R+  M RLH++PD  VP EIL N+S QI Q+R VPKRL   S +EVE++PK+ DYP  +++R
Sbjct:    1 MSALRRAQQWATFTRTWHLYDATWQNPFNSAEVIKKYLMGLHKPIYHPMNDCGDHVVVINTRDIALRGDEWRKRVYFHHTGYP-----GGASWTLAWELHNKNPVLVLKKAVYTSMVGNLQRRHTMQRLHLFPDSKVPEEILGNISNQIKQLRPVPKRLDHMSPEEVEQFPKIMDYPTDYIVR 178
[Close]
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1080057876|ref|XP_018570751.1| (39S ribosomal protein L13, mitochondrial [Anoplophora glabripennis])

HSP 1 Score: 229.18 bits (583), Expect = 5.921e-74
Identity = 104/183 (56.83%), Postives = 138/183 (75.41%), Query Frame = 0 
Query:    1 MSKFQRVQQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDDVVPPEILRNVSAQIPQVRTVPKRLQEFSSQEVEEYPKLWDYPEAHVIR 183
            MS  +RVQQW+TFAR W +YDA WQNPF+SAK + + + GMHKPIY P  DCGD VVVINS D+AL G EW+ RVYFHHTG+P     GGA W  AWELH++DPT+V  KA YN++ G+L+R+  M RL ++PD  VP +++ N+S QI Q+R VPKRL ++S +EV+E+PK+ DYP  +++R
Sbjct:    1 MSALKRVQQWATFARVWHLYDAAWQNPFNSAKVIKKYLMGMHKPIYHPLNDCGDVVVVINSADIALPGDEWKKRVYFHHTGYP-----GGASWTLAWELHNKDPTMVLKKAVYNSMDGNLQRRYTMQRLFIFPDSNVPNDLMENISNQIKQIRKVPKRLDKYSEKEVKEFPKIIDYPRDYIVR 178
[Close]
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1069798781|ref|XP_018324022.1| (PREDICTED: 39S ribosomal protein L13, mitochondrial [Agrilus planipennis] >gi|1069798783|ref|XP_018324023.1| PREDICTED: 39S ribosomal protein L13, mitochondrial [Agrilus planipennis] >gi|1069798786|ref|XP_018324024.1| PREDICTED: 39S ribosomal protein L13, mitochondrial [Agrilus planipennis])

HSP 1 Score: 228.409 bits (581), Expect = 1.586e-73
Identity = 103/183 (56.28%), Postives = 137/183 (74.86%), Query Frame = 0 
Query:    1 MSKFQRVQQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDDVVPPEILRNVSAQIPQVRTVPKRLQEFSSQEVEEYPKLWDYPEAHVIR 183
            MS  +RVQQW+TFAR W IYDA WQNPF SA  + + + G+HKPIY P  DCGDHVVVIN  ++AL G EW+ RVYFHHTG+P     GGA W  AWELH ++PTL+  KA Y+N+ G+L+R+  M RLH++P++ VP E+++N+S QI Q+R VPKRL  ++  EV+E+PKL DYP+ ++IR
Sbjct:    1 MSALKRVQQWATFARIWHIYDATWQNPFESAALLKKYLMGLHKPIYHPLADCGDHVVVINCSEIALPGDEWKKRVYFHHTGYP-----GGASWTLAWELHKKNPTLILKKAIYHNMRGNLQRRYTMERLHLFPNESVPDEVMKNISNQIRQIRPVPKRLDHYTEDEVKEFPKLIDYPKDYIIR 178
[Close]
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|998521453|ref|XP_015521754.1| (PREDICTED: 39S ribosomal protein L13, mitochondrial [Neodiprion lecontei])

HSP 1 Score: 226.868 bits (577), Expect = 5.344e-73
Identity = 104/183 (56.83%), Postives = 136/183 (74.32%), Query Frame = 0 
Query:    1 MSKFQRVQQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDDVVPPEILRNVSAQIPQVRTVPKRLQEFSSQEVEEYPKLWDYPEAHVIR 183
            MS  +R QQW+TFAR+W ++DA WQNPF SA+ + + + G+HKPIY P  DCGDHVVV+NSRD+AL G EW+ RVYFHHT +P     GGA W  AWELH+++PTLV  KA YN + G+L+R+  M RLHV+PDD +P EIL+N+S QI  +R VP RL   S +EVE YPK+ DYP+ +++R
Sbjct:    1 MSAVKRAQQWATFARTWHLFDATWQNPFDSAQVIIKHLMGLHKPIYHPMNDCGDHVVVMNSRDIALPGDEWRKRVYFHHTTYP-----GGASWTLAWELHNKNPTLVIKKAVYNGMDGNLQRRHTMQRLHVFPDDKIPEEILKNISNQIRYLRPVPTRLDHISPEEVENYPKIVDYPKQYILR 178
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BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1059401229|ref|XP_017773527.1| (PREDICTED: 39S ribosomal protein L13, mitochondrial [Nicrophorus vespilloides])

HSP 1 Score: 226.483 bits (576), Expect = 8.279e-73
Identity = 104/183 (56.83%), Postives = 135/183 (73.77%), Query Frame = 0 
Query:    1 MSKFQRVQQWSTFARSWWIYDAQWQNPFHSAKKVTRVMQGMHKPIYSPNTDCGDHVVVINSRDVALMGREWQMRVYFHHTGFPKTHFKGGARWIPAWELHSRDPTLVFWKACYNNLYGDLKRKGFMARLHVYPDDVVPPEILRNVSAQIPQVRTVPKRLQEFSSQEVEEYPKLWDYPEAHVIR 183
            MS  +RVQQW+TFAR W IYDA WQNPF SA  + + + G +KPIY P  DCGDHVVVINS D+AL G EW+ RVYFHHTG+P+     GA W  AW+LH +DPTLV  KA YN++ G+L+R+  M RLH+YPD  VP +I++N+S Q+   R VPKRL  +S +EVEE+PK+ DYP+ +++R
Sbjct:    1 MSSLKRVQQWATFARIWHIYDASWQNPFQSAGLLKKYLMGTYKPIYHPLNDCGDHVVVINSGDIALPGDEWKKRVYFHHTGYPR-----GASWTLAWQLHKKDPTLVLKKAVYNSMDGNLQRRYTMERLHIYPDANVPADIMKNISNQLATPREVPKRLDHYSEKEVEEFPKIMDYPKNYILR 178
The following BLAST results are available for this feature:
BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAG000000044187.586e-8765.75supercontig:LSalAtl2s:LSalAtl2s231:1239661:1249862... [more]
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BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|31340372|sp|Q9VJ38.2|RM13_DROME2.388e-7053.55RecName: Full=39S ribosomal protein L13, mitochond... [more]
gi|22257023|sp|Q9BYD1.1|RM13_HUMAN3.690e-5443.58RecName: Full=39S ribosomal protein L13, mitochond... [more]
gi|22257024|sp|Q9D1P0.1|RM13_MOUSE1.772e-5243.02RecName: Full=39S ribosomal protein L13, mitochond... [more]
gi|91207746|sp|Q3SYS1.1|RM13_BOVIN2.653e-5241.34RecName: Full=39S ribosomal protein L13, mitochond... [more]
gi|226702847|sp|B5YDX6.1|RL13_DICT66.327e-2336.13RecName: Full=50S ribosomal protein L13[more]
gi|226702848|sp|B8E1G6.1|RL13_DICTD8.237e-2234.45RecName: Full=50S ribosomal protein L13[more]
gi|81678467|sp|Q5R0K6.1|RL13_IDILO9.192e-2137.01RecName: Full=50S ribosomal protein L13[more]
gi|118573455|sp|Q2LPM2.1|RL13_SYNAS6.313e-2032.00RecName: Full=50S ribosomal protein L13[more]
gi|189040990|sp|A9NEI3.1|RL13_ACHLI1.393e-1934.71RecName: Full=50S ribosomal protein L13[more]
gi|254798503|sp|B9E9M3.1|RL13_MACCJ3.104e-1932.52RecName: Full=50S ribosomal protein L13[more]

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BLAST of 39s ribosomal protein mitochondrial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|290561136|gb|ADD37970.1|3.037e-9166.3039S ribosomal protein L13, mitochondrial [Lepeopht... [more]
gi|225709584|gb|ACO10638.1|1.108e-8764.6439S ribosomal protein L13, mitochondrial [Caligus ... [more]
gi|225718160|gb|ACO14926.1|1.064e-8564.2039S ribosomal protein L13, mitochondrial [Caligus ... [more]
gi|1325299100|ref|XP_023331570.1|3.147e-8259.3639S ribosomal protein L13, mitochondrial-like [Eur... [more]
gi|1339058507|ref|XP_023717779.1|1.491e-7455.7439S ribosomal protein L13, mitochondrial [Cryptote... [more]
gi|817079330|ref|XP_012262076.1|5.307e-7456.2839S ribosomal protein L13, mitochondrial [Athalia ... [more]
gi|1080057876|ref|XP_018570751.1|5.921e-7456.8339S ribosomal protein L13, mitochondrial [Anoploph... [more]
gi|1069798781|ref|XP_018324022.1|1.586e-7356.28PREDICTED: 39S ribosomal protein L13, mitochondria... [more]
gi|998521453|ref|XP_015521754.1|5.344e-7356.83PREDICTED: 39S ribosomal protein L13, mitochondria... [more]
gi|1059401229|ref|XP_017773527.1|8.279e-7356.83PREDICTED: 39S ribosomal protein L13, mitochondria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold934_size79169supercontigscaffold934_size79169:73868..74419 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold934_size79169-processed-gene-0.11-mRNA-1snap_masked-scaffold934_size79169-processed-gene-0.11-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold934_size79169:73868..74419+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold934_size79169-processed-gene-0.11 ID=snap_masked-scaffold934_size79169-processed-gene-0.11|Name=39s ribosomal protein mitochondrial|organism=Tigriopus kingsejongensis|type=gene|length=552bp|location=Sequence derived from alignment at scaffold934_size79169:73868..74419+ (Tigriopus kingsejongensis)
ATGTCCAAGTTCCAGCGAGTGCAGCAATGGTCCACGTTCGCTCGGAGCTG
GTGGATCTACGATGCCCAGTGGCAGAATCCCTTTCACAGCGCCAAGAAGG
TGACCCGAGTGATGCAGGGCATGCATAAGCCCATTTACTCGCCCAACACG
GACTGCGGGGATCACGTGGTGGTCATCAATAGCCGCGATGTGGCCCTCAT
GGGTCGGGAGTGGCAGATGCGCGTCTACTTTCACCACACCGGCTTTCCCA
AGACGCACTTCAAGGGCGGCGCCCGCTGGATCCCGGCCTGGGAGCTGCAT
TCGCGCGATCCCACGCTCGTGTTCTGGAAGGCCTGCTACAATAACCTCTA
CGGCGACCTCAAACGTAAGGGCTTCATGGCCCGCCTCCACGTCTATCCCG
ACGACGTCGTCCCGCCGGAGATCCTACGCAACGTCTCGGCCCAGATCCCC
CAAGTCCGGACTGTGCCCAAGCGGCTCCAAGAGTTCAGCAGCCAGGAGGT
GGAAGAGTATCCCAAGCTCTGGGACTACCCCGAAGCTCACGTCATCCGAT
AG
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Synonyms
The feature '39s ribosomal protein mitochondrial' has the following synonyms
Synonym
Tk02404
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