histone h2a, snap_masked-scaffold1689_size31069-processed-gene-0.0 (gene) Tigriopus kingsejongensis

Overview
Namehistone h2a
Unique Namesnap_masked-scaffold1689_size31069-processed-gene-0.0
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of histone h2a vs. L. salmonis genes
Match: EMLSAG00000005641 (supercontig:LSalAtl2s:LSalAtl2s303:362466:370455:1 gene:EMLSAG00000005641 transcript:EMLSAT00000005641 description:"maker-LSalAtl2s303-augustus-gene-3.23")

HSP 1 Score: 198.749 bits (504), Expect = 2.594e-60
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 0 
Query:   16 SRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKSA 121
            SR +RAGLQFPVGRIHR+LRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL+G TIAQGG LPNIQA L  KK A
Sbjct:  576 SRXSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLAGXTIAQGGXLPNIQALLFLKKYA 681
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BLAST of histone h2a vs. L. salmonis genes
Match: EMLSAG00000012511 (supercontig:LSalAtl2s:LSalAtl2s921:217466:218531:-1 gene:EMLSAG00000012511 transcript:EMLSAT00000012511 description:"maker-LSalAtl2s921-augustus-gene-1.59")

HSP 1 Score: 176.407 bits (446), Expect = 2.941e-58
Identity = 97/104 (93.27%), Postives = 102/104 (98.08%), Query Frame = 0 
Query:   17 RSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKS 120
            RS+RAGLQFPVGRIHR+LRKGNYAERVGAGAPVYLAA +EYLAAE+LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL+GVTIAQGGVLPNIQA LLPKKS
Sbjct:   27 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAXLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKS 130
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BLAST of histone h2a vs. L. salmonis genes
Match: EMLSAG00000001108 (supercontig:LSalAtl2s:LSalAtl2s1185:74095:74469:1 gene:EMLSAG00000001108 transcript:EMLSAT00000001108 description:"augustus_masked-LSalAtl2s1185-processed-gene-0.1")

HSP 1 Score: 167.548 bits (423), Expect = 5.320e-55
Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 0 
Query:   16 SRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKSAQGA 124
            SRS+RAGLQFPVGRIHR+LRKGNYAERVGAGAPVYLAAV E LAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL+GV IAQGGVLPNIQA LLPKK+ + A
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVXEXLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLAGVXIAQGGVLPNIQAVLLPKKTEKSA 124
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BLAST of histone h2a vs. L. salmonis genes
Match: EMLSAG00000008130 (supercontig:LSalAtl2s:LSalAtl2s484:362061:414899:-1 gene:EMLSAG00000008130 transcript:EMLSAT00000008130 description:"augustus_masked-LSalAtl2s484-processed-gene-3.0")

HSP 1 Score: 155.221 bits (391), Expect = 6.105e-50
Identity = 77/120 (64.17%), Postives = 85/120 (70.83%), Query Frame = 0 
Query:    5 GKGGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKSAQGA 124
            GKGG   G +K  S+R GLQ PVGR HR LRKG YAE VGA  PVYLAAVM  L  EVLE  GN + DN  TRIIPRHL LAIRNDEEL KLL+  +I QG + PNI A LLPKK+ + A
Sbjct:   18 GKGGNVGGDSKYCSSRTGLQLPVGRFHRFLRKGYYAESVGANTPVYLAAVMYCLTTEVLESXGNXSCDNTNTRIIPRHLLLAIRNDEELKKLLASXSILQGSIXPNIXAVLLPKKNEKSA 137
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BLAST of histone h2a vs. L. salmonis genes
Match: EMLSAG00000007561 (supercontig:LSalAtl2s:LSalAtl2s436:406900:407148:1 gene:EMLSAG00000007561 transcript:EMLSAT00000007561 description:"augustus_masked-LSalAtl2s436-processed-gene-4.1")

HSP 1 Score: 142.124 bits (357), Expect = 1.436e-45
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0 
Query:   43 VGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKSAQGA 124
            +GAGAPVYLAAVME LAAEVLELAGNAARDNK TRIIPRHLQLAIRNDEELNKLL GVTIAQGGVLPNIQA LL KK+ + A
Sbjct:    1 MGAGAPVYLAAVMEXLAAEVLELAGNAARDNKXTRIIPRHLQLAIRNDEELNKLLVGVTIAQGGVLPNIQAVLLSKKTEKSA 82
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BLAST of histone h2a vs. L. salmonis genes
Match: EMLSAG00000003537 (supercontig:LSalAtl2s:LSalAtl2s193:353311:359396:-1 gene:EMLSAG00000003537 transcript:EMLSAT00000003537 description:"augustus-LSalAtl2s193-processed-gene-3.2")

HSP 1 Score: 130.568 bits (327), Expect = 5.381e-40
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 0 
Query:   35 RKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKK 119
            RKGNY E VGAGAP+YL AV+EYLAAEVLEL GNAARD++K RI   HLQL I ND ELNKLL+G TIAQGGVLPNIQA   P K
Sbjct:   75 RKGNYTECVGAGAPIYLTAVIEYLAAEVLELVGNAARDDRKARIFTLHLQLVICNDGELNKLLAGETIAQGGVLPNIQAVTWPYK 159
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BLAST of histone h2a vs. L. salmonis genes
Match: EMLSAG00000001981 (supercontig:LSalAtl2s:LSalAtl2s1352:73992:74474:1 gene:EMLSAG00000001981 transcript:EMLSAT00000001981 description:"augustus_masked-LSalAtl2s1352-processed-gene-0.2")

HSP 1 Score: 117.087 bits (292), Expect = 1.012e-34
Identity = 78/156 (50.00%), Postives = 90/156 (57.69%), Query Frame = 0 
Query:    1 MSGRGKGGKTKGKAK----SRSNRAGLQFPVGRIHRILRKGNYAE-RVGAGAPVYLAAVMEYLAAE--------------------------------VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKK 119
            M+G GK GK  GKAK    SRS RAGLQFPVGRIHR L+    +  RVGA A VY AA++E L AE                                VLELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I  SL+ KK
Sbjct:    1 MAG-GKAGKDSGKAKAKAVSRSARAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEXLTAEXIAMIIMIDKYYSLKDIAIIFILFNSSTFIHQVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKA-TIAGGGVIPHIHKSLIGKK 154
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BLAST of histone h2a vs. L. salmonis genes
Match: EMLSAG00000008824 (supercontig:LSalAtl2s:LSalAtl2s54:205060:215917:-1 gene:EMLSAG00000008824 transcript:EMLSAT00000008824 description:"snap_masked-LSalAtl2s54-processed-gene-2.1")

HSP 1 Score: 112.849 bits (281), Expect = 9.801e-34
Identity = 57/90 (63.33%), Postives = 68/90 (75.56%), Query Frame = 0 
Query:   29 RIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPK 118
            +I R+LRK N  ER+GAG  +YL AVMEYLAAEVLELAGNAA DN+KTRII  HLQL I NDE+L K+L+  TI +G +L NIQ   + K
Sbjct:   15 KIDRLLRKINSGERIGAGTSIYLVAVMEYLAAEVLELAGNAAHDNRKTRIIYIHLQLVICNDEKLYKMLAT-TITKGVILHNIQTVFIYK 103
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BLAST of histone h2a vs. L. salmonis genes
Match: EMLSAG00000012597 (supercontig:LSalAtl2s:LSalAtl2s944:131989:132225:-1 gene:EMLSAG00000012597 transcript:EMLSAT00000012597 description:"augustus_masked-LSalAtl2s944-processed-gene-0.3")

HSP 1 Score: 105.145 bits (261), Expect = 4.959e-31
Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 0 
Query:    1 MSGRGKGGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR 77
            M G+GKG K KGK++S S+R GLQF V RIHR+LRK +  +RVGAGA VYL  V EYL AE+LE+  N ARDNKKTR
Sbjct:    1 MRGQGKGSKAKGKSRSCSSRDGLQFSVKRIHRLLRKDSTTDRVGAGAFVYLVVVQEYLTAEILEMVENTARDNKKTR 77
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BLAST of histone h2a vs. L. salmonis genes
Match: EMLSAG00000003259 (supercontig:LSalAtl2s:LSalAtl2s1791:770:1305:-1 gene:EMLSAG00000003259 transcript:EMLSAT00000003259 description:"snap_masked-LSalAtl2s1791-processed-gene-0.2")

HSP 1 Score: 99.7525 bits (247), Expect = 6.673e-29
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0 
Query:   16 SRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLEL 65
            SRS+RAGLQFPVGRIHR+LRKGNYAERVGAGAPVYLAAVMEYLAAEVLE 
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLEF 65
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BLAST of histone h2a vs. SwissProt
Match: gi|122044770|sp|P02269.2|H2A_ASTRU (RecName: Full=Histone H2A)

HSP 1 Score: 226.483 bits (576), Expect = 6.716e-77
Identity = 112/124 (90.32%), Postives = 118/124 (95.16%), Query Frame = 0 
Query:    1 MSGRGKGGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKSAQGA 124
            MSGRGKGGK + KAKSRS+RAGLQFPVGR+HR LRKGNYAERVGAGAPVYLAAVMEYLAAE+LELAGNAARDNKKTRI PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA LLPKK+A+ A
Sbjct:    1 MSGRGKGGKARAKAKSRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVMEYLAAEILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTAKAA 124
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BLAST of histone h2a vs. SwissProt
Match: gi|121993|sp|P27661.2|H2AX_MOUSE (RecName: Full=Histone H2AX; Short=H2a/x; AltName: Full=Histone H2A.X)

HSP 1 Score: 222.631 bits (566), Expect = 4.747e-75
Identity = 116/143 (81.12%), Postives = 124/143 (86.71%), Query Frame = 0 
Query:    1 MSGRGK-GGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKSAQGAGAKA-----GAKTNSQEY 137
            MSGRGK GGK + KAKSRS+RAGLQFPVGR+HR+LRKG+YAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL GVTIAQGGVLPNIQA LLPKKS+   G KA      A   SQEY
Sbjct:    1 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSATVGPKAPAVGKKASQASQEY 143
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BLAST of histone h2a vs. SwissProt
Match: gi|121992|sp|P16104.2|H2AX_HUMAN (RecName: Full=Histone H2AX; Short=H2a/x; AltName: Full=Histone H2A.X)

HSP 1 Score: 221.09 bits (562), Expect = 1.501e-74
Identity = 115/143 (80.42%), Postives = 124/143 (86.71%), Query Frame = 0 
Query:    1 MSGRGK-GGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKSAQGAGAKA-----GAKTNSQEY 137
            MSGRGK GGK + KAKSRS+RAGLQFPVGR+HR+LRKG+YAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL GVTIAQGGVLPNIQA LLPKK++   G KA      A   SQEY
Sbjct:    1 MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTSATVGPKAPSGGKKATQASQEY 143
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BLAST of histone h2a vs. SwissProt
Match: gi|121966|sp|P06897.2|H2A1_XENLA (RecName: Full=Histone H2A type 1)

HSP 1 Score: 219.935 bits (559), Expect = 3.686e-74
Identity = 108/129 (83.72%), Postives = 119/129 (92.25%), Query Frame = 0 
Query:    1 MSGRGK-GGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKSAQGAGAKA 128
            MSGRGK GGKT+ KAK+RS+RAGLQFPVGR+HR+LRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRHLQLA+RNDEELNKLL GVTIAQGGVLPNIQ+ LLPKK+     AK+
Sbjct:    1 MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTESAKSAKS 129
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BLAST of histone h2a vs. SwissProt
Match: gi|121987|sp|P16886.2|H2AL_STRPU (RecName: Full=Late histone H2A.L3)

HSP 1 Score: 219.164 bits (557), Expect = 5.973e-74
Identity = 108/125 (86.40%), Postives = 118/125 (94.40%), Query Frame = 0 
Query:    1 MSGRGKG-GKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKSAQGA 124
            MSGRGKG GK + KAKSRS RAGLQFPVGR+HR LRKGNYA+RVGAGAPVYLAAV+EYLAAE+LELAGNAARDNKKTRIIPRHLQLA+RNDEELNKLLSGVTIAQGGVLPNIQA LLPKK+++ +
Sbjct:    1 MSGRGKGAGKARAKAKSRSARAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTSKAS 125
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BLAST of histone h2a vs. SwissProt
Match: gi|122004|sp|P02264.2|H2A_ONCMY (RecName: Full=Histone H2A)

HSP 1 Score: 218.009 bits (554), Expect = 1.656e-73
Identity = 108/128 (84.38%), Postives = 118/128 (92.19%), Query Frame = 0 
Query:    1 MSGRGK-GGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKSAQGAGAK 127
            MSGRGK GGK + KAK+RS+RAGLQFPVGR+HR+LRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRHLQLA+RNDEELNKLL GVTIAQGGVLPNIQA LLPKK+ +   AK
Sbjct:    1 MSGRGKTGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEKAVKAK 128
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BLAST of histone h2a vs. SwissProt
Match: gi|73919746|sp|Q6GM86.3|H2AX_XENLA (RecName: Full=Histone H2AX; Short=H2a/x; AltName: Full=Histone H2A.X)

HSP 1 Score: 217.238 bits (552), Expect = 4.644e-73
Identity = 111/140 (79.29%), Postives = 125/140 (89.29%), Query Frame = 0 
Query:    1 MSGRGKG-GKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKSAQGAGAKAGAKTN--SQEY 137
            MSGRGK   KT+ KAK+RS+RAGLQFPVGR+HR+LRKGNYA RVGAGAPVYLAAV+EYL AE+LELAGNAARDNKK+RIIPRHLQLA+RNDEELNKLL GVTIAQGGVLPNIQA LLPKKS+ G  + +G K++  SQEY
Sbjct:    1 MSGRGKAVSKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAHRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSGGV-STSGKKSSQQSQEY 139
[Close]
BLAST of histone h2a vs. SwissProt
Match: gi|73919733|sp|Q7ZUY3.3|H2AX_DANRE (RecName: Full=Histone H2AX; Short=H2a/x; AltName: Full=Histone H2A.X)

HSP 1 Score: 217.238 bits (552), Expect = 5.785e-73
Identity = 107/123 (86.99%), Postives = 116/123 (94.31%), Query Frame = 0 
Query:    1 MSGRGK-GGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKSAQ 122
            MSGRGK GGK + KAK+RS+RAGLQFPVGR+HR+LRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRHLQLA+RNDEELNKLL GVTIAQGGVLPNIQA LLPKK+ Q
Sbjct:    1 MSGRGKTGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTGQ 123
[Close]
BLAST of histone h2a vs. SwissProt
Match: gi|74750623|sp|Q8IUE6.3|H2A2B_HUMAN (RecName: Full=Histone H2A type 2-B)

HSP 1 Score: 216.083 bits (549), Expect = 1.001e-72
Identity = 107/121 (88.43%), Postives = 115/121 (95.04%), Query Frame = 0 
Query:    1 MSGRGK-GGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKS 120
            MSGRGK GGK + KAKSRS+RAGLQFPVGR+HR+LRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRHLQLA+RNDEELNKLL GVTIAQGGVLPNIQA LLPKK+
Sbjct:    1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of histone h2a vs. SwissProt
Match: gi|74752099|sp|Q96QV6.3|H2A1A_HUMAN (RecName: Full=Histone H2A type 1-A; AltName: Full=Histone H2A/r)

HSP 1 Score: 215.698 bits (548), Expect = 1.421e-72
Identity = 106/121 (87.60%), Postives = 115/121 (95.04%), Query Frame = 0 
Query:    1 MSGRGK-GGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKS 120
            MSGRGK GGK + K+KSRS+RAGLQFPVGRIHR+LRKGNYAER+GAGAPVYLAAV+EYL AE+LELAGNA+RDNKKTRIIPRHLQLAIRNDEELNKLL GVTIAQGGVLPNIQA LLPKK+
Sbjct:    1 MSGRGKQGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLTAEILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of histone h2a vs. nr
Match: gi|1207973022|ref|XP_021377317.1| (histone H2A [Mizuhopecten yessoensis] >gi|1205887989|gb|OWF38953.1| Histone H2A [Mizuhopecten yessoensis])

HSP 1 Score: 235.343 bits (599), Expect = 8.920e-78
Identity = 119/137 (86.86%), Postives = 126/137 (91.97%), Query Frame = 0 
Query:    1 MSGRGKGGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKSAQGAGAKAGAKTNSQEY 137
            MSGRGKGGKTK KAKSRS+RAGLQFPVGRIHR+LRKGNYAERVGAGAPVYLAAV+EYLAAEVLELAGNAARDNKK+RIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA LLPKK+    GA  G  + SQE+
Sbjct:    1 MSGRGKGGKTKSKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT----GATKGKSSQSQEF 133
[Close]
BLAST of histone h2a vs. nr
Match: gi|805823518|ref|XP_012151724.1| (PREDICTED: histone H2A-like [Megachile rotundata])

HSP 1 Score: 233.417 bits (594), Expect = 4.003e-77
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 0 
Query:    1 MSGRGKGGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKS 120
            MSGRGKGGK KGKAKSRSNRAGLQFPVGRIHR+LRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA LLPKK+
Sbjct:    1 MSGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of histone h2a vs. nr
Match: gi|1214569827|gb|ASJ26422.1| (Histone H2A [Pieris rapae])

HSP 1 Score: 233.417 bits (594), Expect = 4.275e-77
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 0 
Query:    1 MSGRGKGGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKS 120
            MSGRGKGGK KGKAKSRSNRAGLQFPVGRIHR+LRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA LLPKK+
Sbjct:    1 MSGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of histone h2a vs. nr
Match: gi|1339929068|gb|POS83062.1| (histone H2A [Erysiphe pulchra])

HSP 1 Score: 233.417 bits (594), Expect = 4.322e-77
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 0 
Query:    1 MSGRGKGGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKS 120
            MSGRGKGGK KGKAKSRSNRAGLQFPVGRIHR+LRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA LLPKK+
Sbjct:    1 MSGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of histone h2a vs. nr
Match: gi|157674605|gb|ABV60391.1| (histone H2A [Artemia franciscana])

HSP 1 Score: 233.802 bits (595), Expect = 4.334e-77
Identity = 120/137 (87.59%), Postives = 126/137 (91.97%), Query Frame = 0 
Query:    1 MSGRGKGGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKSAQGAGAKAGAKTNSQEY 137
            M+GRGKGGKTK K+KSRS RAGLQFPVGRIHR+L+KGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK+RIIPRHLQLAIRNDEELNKLL GVTIAQGGVLPNIQA LLPKK A+GA AKA     SQEY
Sbjct:    1 MTGRGKGGKTKAKSKSRSGRAGLQFPVGRIHRMLKKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK-AEGASAKAKGGGQSQEY 136
[Close]
BLAST of histone h2a vs. nr
Match: gi|1189073698|ref|XP_020804711.1| (histone H2A-like [Drosophila serrata])

HSP 1 Score: 233.032 bits (593), Expect = 4.467e-77
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 0 
Query:    1 MSGRGKGGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKS 120
            MSGRGKGGK KGKAKSRSNRAGLQFPVGRIHR+LRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA LLPKK+
Sbjct:    1 MSGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of histone h2a vs. nr
Match: gi|805790453|ref|XP_012141737.1| (PREDICTED: histone H2A-like [Megachile rotundata])

HSP 1 Score: 233.032 bits (593), Expect = 5.266e-77
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 0 
Query:    1 MSGRGKGGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKS 120
            MSGRGKGGK KGKAKSRSNRAGLQFPVGRIHR+LRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA LLPKK+
Sbjct:    1 MSGRGKGGKAKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of histone h2a vs. nr
Match: gi|780616284|ref|XP_011697044.1| (PREDICTED: histone H2A-like [Wasmannia auropunctata])

HSP 1 Score: 233.032 bits (593), Expect = 5.502e-77
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 0 
Query:    1 MSGRGKGGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKS 120
            MSGRGKGGK KGKAKSRSNRAGLQFPVGRIHR+LRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA LLPKK+
Sbjct:    1 MSGRGKGGKIKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of histone h2a vs. nr
Match: gi|1228362961|ref|XP_021968072.1| (histone H2A-like [Folsomia candida])

HSP 1 Score: 233.032 bits (593), Expect = 6.559e-77
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 0 
Query:    1 MSGRGKGGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKS 120
            MSGRGKGGK KGKAKSRS+RAGLQFPVGRIHR+LRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA LLPKKS
Sbjct:    1 MSGRGKGGKVKGKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKS 120
[Close]
BLAST of histone h2a vs. nr
Match: gi|242003146|ref|XP_002422628.1| (histone H2A [Pediculus humanus corporis] >gi|242020968|ref|XP_002430919.1| histone H2A [Pediculus humanus corporis] >gi|212505429|gb|EEB09890.1| histone H2A [Pediculus humanus corporis] >gi|212516137|gb|EEB18181.1| histone H2A [Pediculus humanus corporis])

HSP 1 Score: 232.646 bits (592), Expect = 7.817e-77
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 0 
Query:    1 MSGRGKGGKTKGKAKSRSNRAGLQFPVGRIHRILRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQASLLPKKS 120
            MSGRGKGGK KGKAKSRSNRAGLQFPVGRIHR+LRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA LLPKK+
Sbjct:    1 MSGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
The following BLAST results are available for this feature:
BLAST of histone h2a vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 15
Match NameE-valueIdentityDescription
EMLSAG000000056412.594e-6090.57supercontig:LSalAtl2s:LSalAtl2s303:362466:370455:1... [more]
EMLSAG000000125112.941e-5893.27supercontig:LSalAtl2s:LSalAtl2s921:217466:218531:-... [more]
EMLSAG000000011085.320e-5589.91supercontig:LSalAtl2s:LSalAtl2s1185:74095:74469:1 ... [more]
EMLSAG000000081306.105e-5064.17supercontig:LSalAtl2s:LSalAtl2s484:362061:414899:-... [more]
EMLSAG000000075611.436e-4587.80supercontig:LSalAtl2s:LSalAtl2s436:406900:407148:1... [more]
EMLSAG000000035375.381e-4075.29supercontig:LSalAtl2s:LSalAtl2s193:353311:359396:-... [more]
EMLSAG000000019811.012e-3450.00supercontig:LSalAtl2s:LSalAtl2s1352:73992:74474:1 ... [more]
EMLSAG000000088249.801e-3463.33supercontig:LSalAtl2s:LSalAtl2s54:205060:215917:-1... [more]
EMLSAG000000125974.959e-3164.94supercontig:LSalAtl2s:LSalAtl2s944:131989:132225:-... [more]
EMLSAG000000032596.673e-2994.00supercontig:LSalAtl2s:LSalAtl2s1791:770:1305:-1 ge... [more]

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BLAST of histone h2a vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|122044770|sp|P02269.2|H2A_ASTRU6.716e-7790.32RecName: Full=Histone H2A[more]
gi|121993|sp|P27661.2|H2AX_MOUSE4.747e-7581.12RecName: Full=Histone H2AX; Short=H2a/x; AltName: ... [more]
gi|121992|sp|P16104.2|H2AX_HUMAN1.501e-7480.42RecName: Full=Histone H2AX; Short=H2a/x; AltName: ... [more]
gi|121966|sp|P06897.2|H2A1_XENLA3.686e-7483.72RecName: Full=Histone H2A type 1[more]
gi|121987|sp|P16886.2|H2AL_STRPU5.973e-7486.40RecName: Full=Late histone H2A.L3[more]
gi|122004|sp|P02264.2|H2A_ONCMY1.656e-7384.38RecName: Full=Histone H2A[more]
gi|73919746|sp|Q6GM86.3|H2AX_XENLA4.644e-7379.29RecName: Full=Histone H2AX; Short=H2a/x; AltName: ... [more]
gi|73919733|sp|Q7ZUY3.3|H2AX_DANRE5.785e-7386.99RecName: Full=Histone H2AX; Short=H2a/x; AltName: ... [more]
gi|74750623|sp|Q8IUE6.3|H2A2B_HUMAN1.001e-7288.43RecName: Full=Histone H2A type 2-B[more]
gi|74752099|sp|Q96QV6.3|H2A1A_HUMAN1.421e-7287.60RecName: Full=Histone H2A type 1-A; AltName: Full=... [more]

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BLAST of histone h2a vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1207973022|ref|XP_021377317.1|8.920e-7886.86histone H2A [Mizuhopecten yessoensis] >gi|12058879... [more]
gi|805823518|ref|XP_012151724.1|4.003e-7796.67PREDICTED: histone H2A-like [Megachile rotundata][more]
gi|1214569827|gb|ASJ26422.1|4.275e-7796.67Histone H2A [Pieris rapae][more]
gi|1339929068|gb|POS83062.1|4.322e-7796.67histone H2A [Erysiphe pulchra][more]
gi|157674605|gb|ABV60391.1|4.334e-7787.59histone H2A [Artemia franciscana][more]
gi|1189073698|ref|XP_020804711.1|4.467e-7796.67histone H2A-like [Drosophila serrata][more]
gi|805790453|ref|XP_012141737.1|5.266e-7796.67PREDICTED: histone H2A-like [Megachile rotundata][more]
gi|780616284|ref|XP_011697044.1|5.502e-7796.67PREDICTED: histone H2A-like [Wasmannia auropunctat... [more]
gi|1228362961|ref|XP_021968072.1|6.559e-7796.67histone H2A-like [Folsomia candida][more]
gi|242003146|ref|XP_002422628.1|7.817e-7796.67histone H2A [Pediculus humanus corporis] >gi|24202... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1689_size31069supercontigscaffold1689_size31069:6805..7284 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteC:nucleosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold1689_size31069-processed-gene-0.0-mRNA-1snap_masked-scaffold1689_size31069-processed-gene-0.0-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1689_size31069:6805..7284+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold1689_size31069-processed-gene-0.0 ID=snap_masked-scaffold1689_size31069-processed-gene-0.0|Name=histone h2a|organism=Tigriopus kingsejongensis|type=gene|length=480bp|location=Sequence derived from alignment at scaffold1689_size31069:6805..7284+ (Tigriopus kingsejongensis)
ATGTCAGGTCGCGGGAAAGGTGGCAAGACCAAGGTAAGTGCCGTCCGAAC
TGGGCTGCCAGGCCGTCGATTTCACCCGCCCTCTCTCCGTTTGATCTAGG
GCAAGGCCAAGAGCCGCTCGAACCGCGCCGGACTTCAGTTCCCCGTGGGC
CGCATCCATCGGATCTTGCGCAAGGGCAACTACGCCGAGCGGGTGGGTGC
GGGTGCGCCCGTCTACTTGGCGGCCGTCATGGAGTACTTGGCGGCCGAGG
TGCTCGAATTGGCGGGCAACGCGGCTCGCGACAACAAGAAGACGCGCATC
ATCCCGCGCCATTTGCAATTGGCCATCCGCAACGACGAGGAGCTCAACAA
ATTGCTGTCTGGCGTGACCATCGCGCAAGGGGGCGTGTTGCCCAATATCC
AGGCCTCGCTGCTGCCCAAGAAGTCGGCCCAGGGCGCAGGCGCCAAGGCG
GGCGCCAAGACCAACAGCCAAGAATATTAG
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Synonyms
The feature 'histone h2a' has the following synonyms
Synonym
Tk12194
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