transcription factor sox-2, maker-scaffold892_size84543-snap-gene-0.19 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of transcription factor sox-2 vs. L. salmonis genes
Match: EMLSAG00000012125 (supercontig:LSalAtl2s:LSalAtl2s86:936340:938417:1 gene:EMLSAG00000012125 transcript:EMLSAT00000012125 description:"maker-LSalAtl2s86-snap-gene-9.9") HSP 1 Score: 239.965 bits (611), Expect = 1.182e-73 Identity = 120/147 (81.63%), Postives = 126/147 (85.71%), Query Frame = 0 Query: 122 SPTDYKTSHSHHQTQLPQNSPTLSSGSGGP---SPTPSHNNNIKGLGSKAQDDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLT 265 SP DY S T LPQ SPT S+GSGG SPTP HNNNIK LG DDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWKTLSE+EKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKK+KYP++ Sbjct: 47 SPGDYSKSLG---THLPQPSPTXSTGSGGMDELSPTPPHNNNIKSLGGIKPDDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGTEWKTLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYPMS 190
BLAST of transcription factor sox-2 vs. L. salmonis genes
Match: EMLSAG00000004396 (supercontig:LSalAtl2s:LSalAtl2s230:491269:492547:1 gene:EMLSAG00000004396 transcript:EMLSAT00000004396 description:"maker-LSalAtl2s230-snap-gene-5.6") HSP 1 Score: 154.836 bits (390), Expect = 9.440e-44 Identity = 75/99 (75.76%), Postives = 84/99 (84.85%), Query Frame = 0 Query: 162 KGLGSKAQDDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKE 260 KGLG ++ +KRPMNAFMVWSRGQRRKMA ENPKMHNSEISKRLG+EWK L+E +KRPFIDEAKRLRALHMKEHP+YKYRPRRK K L+KK+ Sbjct: 25 KGLGGESH--------IKRPMNAFMVWSRGQRRKMAAENPKMHNSEISKRLGAEWKVLTELDKRPFIDEAKRLRALHMKEHPEYKYRPRRKPKPLIKKD 115
BLAST of transcription factor sox-2 vs. L. salmonis genes
Match: EMLSAG00000004394 (supercontig:LSalAtl2s:LSalAtl2s230:353480:354680:1 gene:EMLSAG00000004394 transcript:EMLSAT00000004394 description:"maker-LSalAtl2s230-augustus-gene-3.9") HSP 1 Score: 152.14 bits (383), Expect = 2.108e-41 Identity = 75/112 (66.96%), Postives = 87/112 (77.68%), Query Frame = 0 Query: 178 VKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKK-EKYPL------TSGLLPNDPSRNTSQGNA 282 +KRPMNAFMVWSR QRRK+AQENPKMHNSEISKRLGSEWK L+E++KRPFIDEAKR+RA HMK+HP+YKYRPRRK KTL K +P+ S L P +P T N+ Sbjct: 57 IKRPMNAFMVWSRLQRRKIAQENPKMHNSEISKRLGSEWKLLTETDKRPFIDEAKRIRAKHMKDHPEYKYRPRRKPKTLQKNGYXFPMPXLPSAASALDPFNPLHQTFVSNS 168
BLAST of transcription factor sox-2 vs. L. salmonis genes
Match: EMLSAG00000003454 (supercontig:LSalAtl2s:LSalAtl2s1897:25608:26602:1 gene:EMLSAG00000003454 transcript:EMLSAT00000003454 description:"maker-LSalAtl2s1897-snap-gene-0.3") HSP 1 Score: 119.398 bits (298), Expect = 2.065e-31 Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 0 Query: 168 AQDDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRK 252 Q KN + +KRPMNAFMVWS+ +RRK+ + P +HN+EISK LG +WK LS+ E+ PFI EA+RLR LHM+E+PDYKYRPR+K Sbjct: 30 TQTKKNPANHIKRPMNAFMVWSQLERRKIIEIQPDIHNAEISKNLGKKWKLLSQDEREPFIQEAERLRVLHMQEYPDYKYRPRKK 114
BLAST of transcription factor sox-2 vs. L. salmonis genes
Match: EMLSAG00000002070 (supercontig:LSalAtl2s:LSalAtl2s1384:4574:6843:1 gene:EMLSAG00000002070 transcript:EMLSAT00000002070 description:"maker-LSalAtl2s1384-snap-gene-0.5") HSP 1 Score: 115.161 bits (287), Expect = 2.420e-29 Identity = 55/114 (48.25%), Postives = 74/114 (64.91%), Query Frame = 0 Query: 140 NSPTLSSGSGGPSPTPSHNNNIKGLGSKAQDDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKT 253 N P+L P+P Q K+ P+ +KRPMNAFMV+S +R+K+ + P +HN+E+SK LG WK LS+ EK PFI EA+RLR LHM+E+PDYKYRP++KT Sbjct: 9 NFPSLCVDINSPTP----------YSDATQTKKHPPNHIKRPMNAFMVFSHIERKKIIEFQPDIHNAEVSKALGRRWKELSKDEKEPFIQEAERLRLLHMREYPDYKYRPKKKT 112
BLAST of transcription factor sox-2 vs. L. salmonis genes
Match: EMLSAG00000012986 (supercontig:LSalAtl2s:LSalAtl2s98:312691:316904:-1 gene:EMLSAG00000012986 transcript:EMLSAT00000012986 description:"maker-LSalAtl2s98-snap-gene-3.10") HSP 1 Score: 115.546 bits (288), Expect = 9.829e-29 Identity = 49/86 (56.98%), Postives = 68/86 (79.07%), Query Frame = 0 Query: 168 AQDDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKT 253 Q K P+ +KRPMNAFMVWS+ +RRK+ + P+ HN+EISK LG WK L+E +++P+I EA+RLR LH+KE+P+YKYRPR+K+ Sbjct: 63 TQTKKQPPNHIKRPMNAFMVWSQLERRKIIEVTPEKHNAEISKELGRRWKMLNEEDQKPYIQEAERLRVLHLKEYPNYKYRPRKKS 148
BLAST of transcription factor sox-2 vs. L. salmonis genes
Match: EMLSAG00000005555 (supercontig:LSalAtl2s:LSalAtl2s298:363976:367504:1 gene:EMLSAG00000005555 transcript:EMLSAT00000005555 description:"maker-LSalAtl2s298-snap-gene-3.3") HSP 1 Score: 116.701 bits (291), Expect = 2.008e-28 Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 0 Query: 155 PSHNNNIKGLGSKAQDDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK 254 P N++ GS + K+ + +KRPMNAFMVWS+ +RRK+ + P HN+EISK LG WK L E E++P+IDEA+RLR LH +E+PDYKY+PR+K K Sbjct: 5 PDVNDDAAASGSSTK--KHRVNHIKRPMNAFMVWSQLERRKIIEVTPDKHNAEISKELGRRWKLLGEEERQPYIDEAERLRVLHQREYPDYKYKPRKKVK 102
BLAST of transcription factor sox-2 vs. L. salmonis genes
Match: EMLSAG00000006096 (supercontig:LSalAtl2s:LSalAtl2s3300:642:5231:-1 gene:EMLSAG00000006096 transcript:EMLSAT00000006096 description:"augustus_masked-LSalAtl2s3300-processed-gene-0.0") HSP 1 Score: 113.235 bits (282), Expect = 6.121e-28 Identity = 53/135 (39.26%), Postives = 90/135 (66.67%), Query Frame = 0 Query: 161 IKGLGSKAQD-----DKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLLPNDPSRNTSQGNAVVAAAAAR 290 I S+A+D + +R++RPMNAFMVW++ +R+++A ENP +HN+++S+ LG++WK+L+ +E+ P + EA+RLR +HM++ P YKYRPRRK K K +K L + P R+ ++G++ + + R Sbjct: 16 IGDFSSRAEDREALNKRKRNERIRRPMNAFMVWAKVERKRLAXENPDLHNADLSRMLGTKWKSLTPAERAPSVQEAERLRLIHMQDFPHYKYRPRRKKKERSKGDKPSERQYLSVDTPERSPNEGSSDYFSMSHR 150
BLAST of transcription factor sox-2 vs. L. salmonis genes
Match: EMLSAG00000004395 (supercontig:LSalAtl2s:LSalAtl2s230:441516:457820:1 gene:EMLSAG00000004395 transcript:EMLSAT00000004395 description:"augustus_masked-LSalAtl2s230-processed-gene-4.0") HSP 1 Score: 112.464 bits (280), Expect = 1.429e-27 Identity = 56/90 (62.22%), Postives = 64/90 (71.11%), Query Frame = 0 Query: 176 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLT 265 + +KRPMNAFMVWSR +RR++AQENPKMHNSEISKRL DEAKR+RA HM++HPDYKYRPRRK K MK YP T Sbjct: 59 NHIKRPMNAFMVWSRMKRRQIAQENPKMHNSEISKRL----------------DEAKRIRARHMQDHPDYKYRPRRKPKN-MKAPNYPYT 131
BLAST of transcription factor sox-2 vs. L. salmonis genes
Match: EMLSAG00000011293 (supercontig:LSalAtl2s:LSalAtl2s776:116786:181454:1 gene:EMLSAG00000011293 transcript:EMLSAT00000011293 description:"maker-LSalAtl2s776-augustus-gene-1.7") HSP 1 Score: 112.464 bits (280), Expect = 1.474e-27 Identity = 47/86 (54.65%), Postives = 66/86 (76.74%), Query Frame = 0 Query: 168 AQDDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKT 253 Q K+ + +KRPMNAFMVWS+ +RRK+ + P HN++ISK LG WK L+E E+ P+++EA+RLR LH+KE+PDYKY+PR+K Sbjct: 66 TQTKKHRVNHIKRPMNAFMVWSQLERRKIIEVTPDKHNAQISKELGQRWKALNEVERHPYVEEAERLRLLHIKEYPDYKYKPRKKV 151
BLAST of transcription factor sox-2 vs. SwissProt
Match: gi|1351090|sp|P48430.1|SOX2_CHICK (RecName: Full=Transcription factor SOX-2; Short=cSox2; AltName: Full=delta EF2a) HSP 1 Score: 208.764 bits (530), Expect = 1.274e-61 Identity = 114/189 (60.32%), Postives = 130/189 (68.78%), Query Frame = 0 Query: 134 QTQLPQNSPTLSSGSGGPSPTPSHNNNIKGLGSKAQDDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLL-PNDPSRNTSQGNAVVAAAAAR---DMYSSMNGYMPNGYHGYDSTMYNQQYPG 318 +T+L +P +SG G + N+N S A + KN+PDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK LSE+EKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKK+KY L GLL P + T G A D Y+ MNG+ GY + Q+PG Sbjct: 6 ETELKPPAPQQTSGGG------TGNSN-----SAANNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPGTNTMTTGVGVGATLGAGVNQRMDSYAHMNGWTNGGYGMMQEQLGYPQHPG 183
BLAST of transcription factor sox-2 vs. SwissProt
Match: gi|6175039|sp|O42569.1|SOX2_XENLA (RecName: Full=Transcription factor Sox-2; Short=XSox2; Short=XlSox-2; AltName: Full=SRY (sex determining region Y)-box 2) HSP 1 Score: 201.83 bits (512), Expect = 5.306e-59 Identity = 102/146 (69.86%), Postives = 113/146 (77.40%), Query Frame = 0 Query: 175 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLL-PNDPSRNTSQGNAVVAAAAAR-DMYSSMNGYMPNGYHGYDSTMYNQQYPG 318 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK LSE+EKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKK+KY L GLL P + + G ++ A R D Y+ MNG+ GY + Q+PG Sbjct: 34 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPGANAMTSGVGGSLGAGVNQRMDTYAHMNGWTNGGYGMMQEQLGYPQHPG 179
BLAST of transcription factor sox-2 vs. SwissProt
Match: gi|82185672|sp|Q6NVN0.1|SOX2_XENTR (RecName: Full=Transcription factor Sox-2; AltName: Full=SRY (sex determining region Y)-box 2) HSP 1 Score: 200.675 bits (509), Expect = 1.437e-58 Identity = 102/146 (69.86%), Postives = 112/146 (76.71%), Query Frame = 0 Query: 175 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLLPNDPSRNTSQGNAVVAAAAAR--DMYSSMNGYMPNGYHGYDSTMYNQQYPG 318 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK LSE+EKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKK+KY L GLL + TS A + A + D Y+ MNG+ GY + Q+PG Sbjct: 34 PDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPGANPMTSGVGASLGAGVNQRMDTYAHMNGWTNGGYGMMQEQLGYPQHPG 179
BLAST of transcription factor sox-2 vs. SwissProt
Match: gi|82186099|sp|Q6P0E1.1|SOX2_DANRE (RecName: Full=Transcription factor Sox-2) HSP 1 Score: 198.749 bits (504), Expect = 8.986e-58 Identity = 110/181 (60.77%), Postives = 122/181 (67.40%), Query Frame = 0 Query: 151 PSPTPSHNNNIKGLG---SKAQDDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLL-PNDPSRNTSQGNAVVAAAAAR---DMYSSMNGYMPNGYHGYDSTMYNQQYPGYGRYDT 324 P+P P N G G S + KN+PDR+KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK LSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKK+KY L GLL P G A D Y+ MNG+ GY + Q+P ++T Sbjct: 12 PAPQP----NTGGTGNTNSSGNNQKNSPDRIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPGGNGMGAGVGVGAGLGAGVNQRMDSYAHMNGWTNGGYGMMQEQLGYPQHPSLNAHNT 188
BLAST of transcription factor sox-2 vs. SwissProt
Match: gi|1351091|sp|P48431.1|SOX2_HUMAN (RecName: Full=Transcription factor SOX-2) HSP 1 Score: 195.667 bits (496), Expect = 1.554e-56 Identity = 101/160 (63.12%), Postives = 113/160 (70.62%), Query Frame = 0 Query: 170 DDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLLPNDPSRNTSQGNAVVAAAAAR-----------DMYSSMNGYMPNGYHGYDSTMYNQQYPG 318 + KN+PDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK LSE+EKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKK+KY L GLL GN++ + D Y+ MNG+ Y + Q+PG Sbjct: 33 NQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLL-------APGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQDQLGYPQHPG 185
BLAST of transcription factor sox-2 vs. SwissProt
Match: gi|1711465|sp|P54231.1|SOX2_SHEEP (RecName: Full=Transcription factor SOX-2) HSP 1 Score: 195.667 bits (496), Expect = 1.691e-56 Identity = 101/160 (63.12%), Postives = 113/160 (70.62%), Query Frame = 0 Query: 170 DDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLLPNDPSRNTSQGNAVVAAAAAR-----------DMYSSMNGYMPNGYHGYDSTMYNQQYPG 318 + KN+PDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK LSE+EKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKK+KY L GLL GN++ + D Y+ MNG+ Y + Q+PG Sbjct: 36 NQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLL-------APGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQDQLGYPQHPG 188
BLAST of transcription factor sox-2 vs. SwissProt
Match: gi|6094324|sp|P48432.2|SOX2_MOUSE (RecName: Full=Transcription factor SOX-2) HSP 1 Score: 195.282 bits (495), Expect = 2.446e-56 Identity = 102/152 (67.11%), Postives = 111/152 (73.03%), Query Frame = 0 Query: 171 DKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLL-PNDPSRNTSQGNAVVAAAAAR---DMYSSMNGYMPNGYHGYDSTMYNQQYPG 318 KN+PDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK LSE+EKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKK+KY L GLL P S + G D Y+ MNG+ Y + Q+PG Sbjct: 36 QKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGGGLNQRMDSYAHMNGWSNGSYSMMQEQLGYPQHPG 187
BLAST of transcription factor sox-2 vs. SwissProt
Match: gi|74965246|sp|Q21305.2|SOX2_CAEEL (RecName: Full=Transcription factor sox-2) HSP 1 Score: 177.563 bits (449), Expect = 3.557e-50 Identity = 97/170 (57.06%), Postives = 111/170 (65.29%), Query Frame = 0 Query: 103 AAAMAGYGNYTH--HIPPASHSPTDYKTSHSHHQTQLPQNSPT-LSSGSGGPSPTPSHNNNIKGLGSKAQDDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLL 269 +A M Y ++ H+PP S + LPQ+ P LS+G P S +D K N DRVKRPMNAFMVWSRGQR+KMA ENPKMHNSEISKRLG+EWK LSE EKRPFIDEAKRLRA+HMKEHPDYKYRPRRKTK++ KK P+ G L Sbjct: 7 SAKMQDYSGWSFGFHMPPTSST------------NLLPQSMPDDLSNGPDSP-------------DSTGKDGKKNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQEKRPFIDEAKRLRAIHMKEHPDYKYRPRRKTKSINKKNGAPIPFGNL 151
BLAST of transcription factor sox-2 vs. SwissProt
Match: gi|82183737|sp|Q6EJB7.1|SOX3_DANRE (RecName: Full=Transcription factor Sox-3) HSP 1 Score: 173.711 bits (439), Expect = 1.789e-48 Identity = 112/211 (53.08%), Postives = 130/211 (61.61%), Query Frame = 0 Query: 152 SPTPSHNNNIKGLGSKAQDDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLLPNDPSRNTSQGNAVVAAAAARDMYSSMNGYMPNGY-----------------------HGYDSTMYNQQYPGYGRYDTMAAAAGMYSSGGSSY 339 SP P +N + + N+ DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG++WK L+++EKRPFIDEAKRLRA+HMKEHPDYKYRPRRKTKTL+KK+KY L GLL P N + NAV + R Y+ MNG+ + Y H YD M QYP T AA YSS +Y Sbjct: 11 SPIP--QSNTGSVTGGKNNSANDQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDKYSLPGGLLA--PGAN-AVNNAV--SVGQRMDYTHMNGWTNSAYSLMQDQLAYPQHPSMNSPQIQQMHRYD--MAGLQYPMMSTAQTYMNAASTYSSMSPAY 212
BLAST of transcription factor sox-2 vs. SwissProt
Match: gi|82203135|sp|Q6RVD7.1|SX21B_DANRE (RecName: Full=Transcription factor Sox-21-B; AltName: Full=SRY-box containing gene 21b) HSP 1 Score: 171.785 bits (434), Expect = 2.019e-48 Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 0 Query: 176 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKY 262 D VKRPMNAFMVWSR QRRKMAQENPKMHNSEISKRLG+EWK L+ESEKRPFIDEAKRLRA+HMKEHPDYKYRPRRK KTLMKK+K+ Sbjct: 6 DHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLMKKDKF 92
BLAST of transcription factor sox-2 vs. nr
Match: gi|1325262427|ref|XP_023332405.1| (transcription factor Sox-2-like isoform X2 [Eurytemora affinis]) HSP 1 Score: 290.041 bits (741), Expect = 1.242e-88 Identity = 140/182 (76.92%), Postives = 156/182 (85.71%), Query Frame = 0 Query: 134 QTQLPQNSPTLSSGSG-GPSPTPSHNNNIKGLGSKAQDDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLLPNDPSRNTSQGNAVVAAAAARDMYSSMNGYMPNGYHGYDSTMYNQ 314 TQLP++SPTLS+ S G PTP HNNNIKG+GSK DD +P+RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK L+E+EKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKK+KYPL GL+P+DP+R S A+ RDMY SMNGYMPNGYHGYDS+MY+Q Sbjct: 64 HTQLPKSSPTLSNDSDDGECPTPPHNNNIKGMGSKGMDDSKDPNRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLTETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYPLGGGLMPSDPTRPGS-------ASLGRDMYGSMNGYMPNGYHGYDSSMYSQ 238
BLAST of transcription factor sox-2 vs. nr
Match: gi|1325262423|ref|XP_023332396.1| (transcription factor Sox-2-like isoform X1 [Eurytemora affinis]) HSP 1 Score: 285.034 bits (728), Expect = 1.098e-86 Identity = 140/184 (76.09%), Postives = 156/184 (84.78%), Query Frame = 0 Query: 134 QTQLPQNSPTLSSGSG-GPSPTPSHNNNIKGLGSKAQDDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKY--RPRRKTKTLMKKEKYPLTSGLLPNDPSRNTSQGNAVVAAAAARDMYSSMNGYMPNGYHGYDSTMYNQ 314 TQLP++SPTLS+ S G PTP HNNNIKG+GSK DD +P+RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK L+E+EKRPFIDEAKRLRALHMKEHPDYKY RPRRKTKTLMKK+KYPL GL+P+DP+R S A+ RDMY SMNGYMPNGYHGYDS+MY+Q Sbjct: 64 HTQLPKSSPTLSNDSDDGECPTPPHNNNIKGMGSKGMDDSKDPNRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLTETEKRPFIDEAKRLRALHMKEHPDYKYRSRPRRKTKTLMKKDKYPLGGGLMPSDPTRPGS-------ASLGRDMYGSMNGYMPNGYHGYDSSMYSQ 240
BLAST of transcription factor sox-2 vs. nr
Match: gi|1285274205|emb|SOB55485.1| (SoxN, partial [Euperipatoides kanangrensis]) HSP 1 Score: 226.483 bits (576), Expect = 2.597e-66 Identity = 129/204 (63.24%), Postives = 136/204 (66.67%), Query Frame = 0 Query: 154 TPSHNNNIKGLGSKAQDDKNNP-DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLLPNDPSRNTSQGNAVVAAAAARDMYSSMNGY---MPNGYHGYDSTMYNQQYPG---------YGRYDTMAA-----AAGMYSSGGSSY 339 T S N N GS A K NP DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK LSESEKRPFIDEAKRLRA+HMKEHPDYKYRPRRKTKTLMKK+KYPL GLLP D Q RDMY +MNGY MPNGY +D Y Q G Y RYD A + G Y +G SSY Sbjct: 5 TTSQNQNT---GSSA--GKGNPSDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLMKKDKYPLAGGLLPGDARAQVQQ--------VGRDMYGTMNGYMPNMPNGYMMHDPHAYQQHSLGSQMAGNGGLYTRYDMTAQMHSPMSTGSYMNGSSSY 195
BLAST of transcription factor sox-2 vs. nr
Match: gi|1238831594|ref|XP_022247990.1| (transcription factor Sox-3-like [Limulus polyphemus] >gi|1238831596|ref|XP_022247994.1| transcription factor Sox-3-like [Limulus polyphemus] >gi|1238831598|ref|XP_022248000.1| transcription factor Sox-3-like [Limulus polyphemus] >gi|1238831600|ref|XP_022248005.1| transcription factor Sox-3-like [Limulus polyphemus]) HSP 1 Score: 223.787 bits (569), Expect = 2.595e-64 Identity = 127/223 (56.95%), Postives = 144/223 (64.57%), Query Frame = 0 Query: 110 GNYTHHIPPASHSPTDYKTSHSHHQTQLPQNSPTLSSGSGGPSPTPSHNNNIKGLGSKAQDDKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLLPNDPSRNTSQGNAVVAAAAARDMYSSMNGYMPNGYHGYDSTMYNQQYPGYGRYDTMAAAAGMY 332 G +HH P + S T+ SH + + + SS G NN+ G ++K + DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK LSE+EKRPFIDEAKRLRALHMK+HPDYKYRPRRKTK +MKKEKYPL SGLLP D RN AV R+MY MNGYMPNGY Y G MAA+ G+Y Sbjct: 14 GGLSHHSPGHTLSMISCATTTSHQGHHVSTSGASDSSDMG--------NNSTSG-----SNNKKDVDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPFIDEAKRLRALHMKDHPDYKYRPRRKTKNIMKKEKYPLASGLLPTD-VRN----QAVAVQQVNREMY-QMNGYMPNGYPTMMHEAYQHHAAAAGYGTQMAASGGLY 217
BLAST of transcription factor sox-2 vs. nr
Match: gi|1067075570|ref|XP_018021334.1| (PREDICTED: transcription factor Sox-2-like isoform X1 [Hyalella azteca]) HSP 1 Score: 224.942 bits (572), Expect = 1.209e-63 Identity = 114/155 (73.55%), Postives = 124/155 (80.00%), Query Frame = 0 Query: 176 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLLPNDPSRNTSQGNAVVAAAAARDMYSSMNGYMPNG-YHGYDSTM--YNQQYPGYGRYDTMAA 327 +RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK L+ESEKRPFIDEAKRLRA+HMKEHPDYKYRPRRKTKTLMKK+KYPL GLLP+DPSR Q RDMY+ NGYMPNG Y YD + Y+ GYG YD+ AA Sbjct: 133 ERVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLMKKDKYPLAPGLLPSDPSRPPVQ-------QVTRDMYNMTNGYMPNGDYSDYDHVVRYYSPWKDGYG-YDSAAA 279
BLAST of transcription factor sox-2 vs. nr
Match: gi|1048060006|ref|XP_017483454.1| (PREDICTED: transcription factor Sox-2-like [Rhagoletis zephyria]) HSP 1 Score: 220.32 bits (560), Expect = 3.167e-63 Identity = 114/163 (69.94%), Postives = 124/163 (76.07%), Query Frame = 0 Query: 172 KNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGL--LPNDPSRNTSQGNAVVAAAAARDMYSSMNGYMPNGYHGYDSTMYNQQYPGYGRYDTMAAAAGMY 332 K DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK LSE EKRPFIDEAKRLRA+HMKEHPDYKYRPRRKTKTLMKKEKYP+ +GL L +D SR+ + A V +RDMY MNGYM NGY Y Q YG +MAA G+Y Sbjct: 45 KKESDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEVEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLMKKEKYPIGTGLGSLASDQSRSAAAAAAAV-QQVSRDMY-QMNGYMANGYPSMMHEAYQQHAASYGTAASMAANGGLY 205
BLAST of transcription factor sox-2 vs. nr
Match: gi|1067075574|ref|XP_018021336.1| (PREDICTED: transcription factor Sox-2-like isoform X3 [Hyalella azteca]) HSP 1 Score: 222.631 bits (566), Expect = 5.928e-63 Identity = 114/160 (71.25%), Postives = 123/160 (76.88%), Query Frame = 0 Query: 176 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLLPNDPSRNTSQGNAVVAAAAARDMYSSMNGYMPNGY-----HGYDSTMY--NQQYPG-----YGRYD 323 +RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK L+ESEKRPFIDEAKRLRA+HMKEHPDYKYRPRRKTKTLMKK+KYPL GLLP+DPSR Q RDMY+ NGYMPNG +GYDS +Q YP YG YD Sbjct: 133 ERVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLMKKDKYPLAPGLLPSDPSRPPVQ-------QVTRDMYNMTNGYMPNGDYSDYGYGYDSAAAYGSQTYPYMTGQVYGGYD 285
BLAST of transcription factor sox-2 vs. nr
Match: gi|1238838697|ref|XP_022238337.1| (transcription factor Sox-3-like [Limulus polyphemus]) HSP 1 Score: 219.164 bits (557), Expect = 1.044e-62 Identity = 113/164 (68.90%), Postives = 124/164 (75.61%), Query Frame = 0 Query: 171 DKNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLLPNDPSRNTSQGNAVVAAAAARDMYSSMNGYMPNGYHGYDSTMYNQQYPGYGRYDT-MAAAAGMYS 333 +K + DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK LSE+EKRPFIDEAKRLRA+HMKEHPDYKYRPRRKTKTLMKK+KYPL +GLLP D T+ + +RDMY MNGYMPNGY Y Q Y T MAA +YS Sbjct: 49 NKKDADRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLMKKDKYPLAAGLLPTDSRAPTA------VSQVSRDMY-QMNGYMPNGYPTMMHEAYQQHAAAAASYGTQMAANNALYS 205
BLAST of transcription factor sox-2 vs. nr
Match: gi|675375765|gb|KFM68667.1| (Transcription factor SOX-2, partial [Stegodyphus mimosarum]) HSP 1 Score: 216.853 bits (551), Expect = 1.795e-61 Identity = 121/194 (62.37%), Postives = 132/194 (68.04%), Query Frame = 0 Query: 172 KNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLLPNDPSRNTSQGNAVVAAAAARDMYSSMNGYMPNGY---------------HGYDSTMYNQQYPGYGRYDTM--------AAAAGM---YSSGGSSY 339 K + +RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK LSE+EKRPFIDEAKRLRA+HMKEHPDYKYRPRRKTKTLMKK+KYPLT GLLP D ++ A +RDMY MNGYMPNGY GY S M Y RYD M AA+ M Y +G SSY Sbjct: 89 KKDIERVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLMKKDKYPLTGGLLPGD-----TRSPAASVPQVSRDMY-QMNGYMPNGYPTMMHEAAHAYQQHAAGYGSQMSTSGL--YSRYDHMTQMHNPMTTAASSMPVPYMNGSSSY 274
BLAST of transcription factor sox-2 vs. nr
Match: gi|1316135907|ref|XP_023232994.1| (transcription factor Sox-2-like [Centruroides sculpturatus]) HSP 1 Score: 215.312 bits (547), Expect = 4.574e-61 Identity = 106/133 (79.70%), Postives = 115/133 (86.47%), Query Frame = 0 Query: 172 KNNPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGSEWKTLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKEKYPLTSGLLPNDPSRNTSQGNAVVAAAAARDMYSSMNGYMPNGY 304 K + DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG+EWK LSE+EKRPFIDEAKRLRA+HMKEHPDYKYRPRRKTKTLMKK+KYPLT GLLP D RNT+ A +RD+Y +NGYMPNGY Sbjct: 71 KKDQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLMKKDKYPLTGGLLPAD-GRNTAA--AAAVQQVSRDIY-PINGYMPNGY 199 The following BLAST results are available for this feature:
BLAST of transcription factor sox-2 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 17
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BLAST of transcription factor sox-2 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of transcription factor sox-2 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
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The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold892_size84543:46613..59402- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold892_size84543-snap-gene-0.19 ID=maker-scaffold892_size84543-snap-gene-0.19|Name=transcription factor sox-2|organism=Tigriopus kingsejongensis|type=gene|length=12790bp|location=Sequence derived from alignment at scaffold892_size84543:46613..59402- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'transcription factor sox-2' has the following synonyms
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