leukocyte surface antigen cd53, maker-scaffold675_size187964-snap-gene-0.32 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of leukocyte surface antigen cd53 vs. L. salmonis genes
Match: EMLSAG00000007344 (supercontig:LSalAtl2s:LSalAtl2s415:301718:345428:1 gene:EMLSAG00000007344 transcript:EMLSAT00000007344 description:"maker-LSalAtl2s415-augustus-gene-2.17") HSP 1 Score: 48.521 bits (114), Expect = 6.174e-7 Identity = 39/131 (29.77%), Postives = 63/131 (48.09%), Query Frame = 0 Query: 333 GCLVLGFGIYALVNNGQNDILIFDVDSSLYQNIHSNTAEIILVIVSGIIILVSFLGCCGAVLENRGVIFVYFTIMLITTVITTIGSTL--VFTKTIDDVTQP-LLSSLQRYNPNSTDVGPIQMTQVWDQVQ 460 G VLG G++ L++ +IL+ + LY + I +IV +II VS LGC GA + + ++ YF + +V+ IG L VF + +P +L ++ Y P T +T+ WD Q Sbjct: 30 GLSVLGIGLWTLIDKFYIEILL---RNHLYM-----FSTYITMIVGVVIIFVSILGCYGAQKDTKYILLTYFITIFFLSVVLIIGGVLSYVFRDQVKHNLKPEMLHTINIYRPKDTRS---DITEAWDATQ 149
BLAST of leukocyte surface antigen cd53 vs. SwissProt
Match: gi|75039947|sp|Q58DM3.1|CD53_BOVIN (RecName: Full=Leukocyte surface antigen CD53; AltName: Full=Cell surface glycoprotein CD53; AltName: CD_antigen=CD53) HSP 1 Score: 61.2326 bits (147), Expect = 1.393e-9 Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 0 Query: 333 GCLVLGFGIYALVNNGQNDILIFDVDSSLYQNIHSNTAEIILVIVSGIIILVSFLGCCGAVLENRGVIFVYFTIMLITTVITTIGSTLVFT---KTIDDVTQPLLSSLQRYNP-NSTDVGPIQMTQVWDQVQS 461 GC +LG GIY L+++ F V L+ N+ S T +LVIV +I++V+FLGC G++ EN+ ++ +F ++LI + + L+F K + V + L S+QRYN NST WD +QS Sbjct: 24 GCCILGLGIYLLIHSK------FGV---LFHNLPSLTLGNVLVIVGSVIMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTLAILLFVYEQKLKEYVAEGLTESIQRYNSDNSTKAA-------WDSIQS 140
BLAST of leukocyte surface antigen cd53 vs. SwissProt
Match: gi|116019|sp|P19397.1|CD53_HUMAN (RecName: Full=Leukocyte surface antigen CD53; AltName: Full=Cell surface glycoprotein CD53; AltName: Full=Tetraspanin-25; Short=Tspan-25; AltName: CD_antigen=CD53) HSP 1 Score: 60.8474 bits (146), Expect = 2.010e-9 Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 0 Query: 331 LLGCLVLGFGIYALVNNGQNDILIFDVDSSLYQNIHSNTAEIILVIVSGIIILVSFLGCCGAVLENRGVIFVYFTIMLITTVITTIGSTLVFT---KTIDDVTQPLLSSLQRYNP-NSTDVGPIQMTQVWDQVQS 461 + GC +LGFGIY L++N F V L+ N+ S T + VIV II++V+FLGC G++ EN+ ++ +F ++LI + + L+F K + V + L S+ RY+ NST WD +QS Sbjct: 22 ICGCCILGFGIYLLIHNN------FGV---LFHNLPSLTLGNVFVIVGSIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLTDSIHRYHSDNSTKAA-------WDSIQS 140
BLAST of leukocyte surface antigen cd53 vs. SwissProt
Match: gi|2501222|sp|Q61451.2|CD53_MOUSE (RecName: Full=Leukocyte surface antigen CD53; AltName: Full=Cell surface glycoprotein CD53; AltName: CD_antigen=CD53) HSP 1 Score: 56.225 bits (134), Expect = 6.581e-8 Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 0 Query: 333 GCLVLGFGIYALVNNGQNDILIFDVDSSLYQNIHSNTAEIILVIVSGIIILVSFLGCCGAVLENRGVIFVYFTIMLITTVITTIGSTLVFT---KTIDDVTQPLLSSLQRYNPNSTDVGPIQMTQVWDQVQSE 462 GC +LGFGIY LV N L++N+ T ILVIV II++V+FLGC G++ EN+ ++ +F ++LI + + L+F K V + L S+Q Y+ +++ + + WD +Q++ Sbjct: 24 GCCILGFGIYFLVQNTY---------GVLFRNLPFLTLGNILVIVGSIIMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTIAILLFVYEQKLNTLVAEGLNDSIQHYHSDNSTM------KAWDFIQTQ 141
BLAST of leukocyte surface antigen cd53 vs. SwissProt
Match: gi|116020|sp|P24485.3|CD53_RAT (RecName: Full=Leukocyte surface antigen CD53; AltName: Full=Cell surface glycoprotein CD53; AltName: Full=Leukocyte antigen MRC OX-44; AltName: CD_antigen=CD53) HSP 1 Score: 54.6842 bits (130), Expect = 2.504e-7 Identity = 45/134 (33.58%), Postives = 73/134 (54.48%), Query Frame = 0 Query: 333 GCLVLGFGIYALVNNGQNDILIFDVDSSLYQNIHSNTAEIILVIVSGIIILVSFLGCCGAVLENRGVIFVYFTIMLITTVITTIGSTLVFT--KTIDD-VTQPLLSSLQRYNP-NSTDVGPIQMTQVWDQVQSE 462 GC +LGFGI+ LV N L++N+ T +LVIV II++V+FLGC G++ EN+ ++ +F ++L+ + + L+F K I+ V + L S+Q Y+ NST + WD +QS+ Sbjct: 24 GCCILGFGIHLLVQNTYGI---------LFRNLPFLTLGNVLVIVGSIIMVVAFLGCMGSIKENKCLLMSFFVLLLLILLAEVTLAILLFVYEKKINTLVAEGLNDSIQHYHSDNSTRMA-------WDFIQSQ 141
BLAST of leukocyte surface antigen cd53 vs. nr
Match: gi|1207827522|gb|OWK05401.1| (CD53 [Cervus elaphus hippelaphus]) HSP 1 Score: 71.633 bits (174), Expect = 2.372e-11 Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 0 Query: 333 GCLVLGFGIYALVNNGQNDILIFDVDSSLYQNIHSNTAEIILVIVSGIIILVSFLGCCGAVLENRGVIFVYFTIMLITTVITTIGSTLVFT---KTIDDVTQPLLSSLQRYNP-NSTDVGPIQMTQVWDQVQS 461 GC +LGFGIY L+++ F V L+ N+ S T +LVIV II++V+FLGC G++ EN+ ++ +F ++LI + I + L+F K V + L S+QRYN NST WD +QS Sbjct: 11 GCCILGFGIYLLIHSK------FGV---LFHNLPSLTLGNVLVIVGSIIMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVILAILLFVYEQKLQGYVAEGLTKSIQRYNSDNSTKAA-------WDSIQS 127
BLAST of leukocyte surface antigen cd53 vs. nr
Match: gi|1325273887|ref|XP_023321594.1| (tetraspanin-1-like [Eurytemora affinis]) HSP 1 Score: 72.4034 bits (176), Expect = 1.851e-10 Identity = 46/132 (34.85%), Postives = 81/132 (61.36%), Query Frame = 0 Query: 331 LLGCLVLGFGIYALVNNGQNDILIFDVDSSLYQNIHSNTAEIILVIVSGIIILVSFLGCCGAVLENRGVIFVYFTIMLITTVITTIGSTLVFTKTIDDVTQPLLSSLQRYNPNSTDVGPIQMTQVWDQVQSE 462 L C VL GI+ LV+ ++ V+SS+ I+ ++A I+L+ V+ IL+SF GCCGA E+R ++ YF ++L ++ TIG+ + ++ ID+ + PL +L +Y+P S+ ++T +WD +Q+E Sbjct: 21 LFSCTVLALGIWILVDKPSLVNILDQVESSI--PIY-DSAVILLLFVASAAILISFFGCCGAYKESRCMLGSYFLMILSLLILITIGTVIGISQGIDNFSNPLKDTLYKYDPTSSRADIKEITGLWDAMQTE 149
BLAST of leukocyte surface antigen cd53 vs. nr
Match: gi|617619556|ref|XP_007526982.1| (PREDICTED: leukocyte surface antigen CD53 [Erinaceus europaeus]) HSP 1 Score: 68.9366 bits (167), Expect = 1.015e-9 Identity = 49/133 (36.84%), Postives = 72/133 (54.14%), Query Frame = 0 Query: 333 GCLVLGFGIYALVNNGQNDILIFDVDSSLYQNIHSNTAEIILVIVSGIIILVSFLGCCGAVLENRGVIFVYFTIMLITTVITTIGSTLVFT---KTIDDVTQPLLSSLQRYN-PNSTDVGPIQMTQVWDQVQS 461 GC +LGFGIY LV+N F V L+ N+ S T + VIV II++V+FLGC G++ EN+ ++ +F ++LI + + L+F K V + L S++RYN NST WD +QS Sbjct: 24 GCCILGFGIYFLVHNN------FGV---LFHNLPSLTLGNVFVIVGSIIMVVAFLGCMGSIKENKCLLMSFFIMLLIILLAEVTLAILLFMYEKKLSTYVAEGLSDSIKRYNLDNSTKAA-------WDSIQS 140
BLAST of leukocyte surface antigen cd53 vs. nr
Match: gi|1325277529|ref|XP_023323402.1| (leukocyte surface antigen CD53-like [Eurytemora affinis]) HSP 1 Score: 69.707 bits (169), Expect = 1.110e-9 Identity = 50/158 (31.65%), Postives = 81/158 (51.27%), Query Frame = 0 Query: 317 MKQATLDHTTKEKHLLGCLVLGFGIYALVNNGQNDILIFDVDSSLYQNIHSNTAEIILVIVSG----------IIILVSFLGCCGAVLENRGVIFVYFTIMLITTVITTIGSTLVFTKTID-DVTQPLLSSLQRYNPNST-DVGPIQMTQVWDQVQSE 462 M + L T +LG + LGFG + LV+ L D +S L +N A L I +G +++++SF GCCGA ENR ++ YF ++L + +G+ L+F T+D + PLL+S++ YN + D + +VW++VQ E Sbjct: 8 MMKFLLFTTNFIVFILGLVTLGFGCWILVDKPSFLNLFTDAESILAEN-DIEVAGFDLGIYAGAPILLIIIAILVVVISFFGCCGAFKENRCMLTTYFVLILAIFIGGIVGAVLIFQGTLDTQIKDPLLNSIKYYNDEAKDDTSELAFKKVWNEVQKE 164
BLAST of leukocyte surface antigen cd53 vs. nr
Match: gi|1012194797|ref|XP_016011059.1| (PREDICTED: leukocyte surface antigen CD53 isoform X2 [Rousettus aegyptiacus]) HSP 1 Score: 65.4698 bits (158), Expect = 1.080e-8 Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = 0 Query: 333 GCLVLGFGIYALVNNGQNDILIFDVDSSLYQNIHSNTAEIILVIVSGIIILVSFLGCCGAVLENRGVIFVYFTIMLITTVITTIGSTLVFT---KTIDDVTQPLLSSLQRYNP-NSTDVGPIQMTQVWDQVQ 460 GC +LGFGIY LV+N F V L+ N+ S T +LVI+ II++V+FLGC G++ EN+ ++ +F ++LI + + L+F K V + L S+QRY+ NST WD +Q Sbjct: 24 GCCILGFGIYLLVHND------FGV---LFHNLPSLTLGNVLVIIGSIIMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTLAILLFVYEQKLNKSVAEGLTDSMQRYHSDNSTKAA-------WDSIQ 139
BLAST of leukocyte surface antigen cd53 vs. nr
Match: gi|528753529|gb|EPY73188.1| (leukocyte surface antigen CD53 [Camelus ferus]) HSP 1 Score: 65.0846 bits (157), Expect = 1.560e-8 Identity = 47/133 (35.34%), Postives = 74/133 (55.64%), Query Frame = 0 Query: 333 GCLVLGFGIYALVNNGQNDILIFDVDSSLYQNIHSNTAEIILVIVSGIIILVSFLGCCGAVLENRGVIFVYFTIMLITTVITTIGSTLVFT---KTIDDVTQPLLSSLQRYNP-NSTDVGPIQMTQVWDQVQS 461 GC +LGFGIY L++N F V L+ N+ S T +L+IV II++V+FLGC G++ EN+ ++ +F ++LI + + L+F K D V + L S++RY+ NST WD +Q+ Sbjct: 55 GCCILGFGIYLLIHNN------FGV---LFHNLPSLTLGNVLIIVGSIIMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTLAILLFVYERKLNDYVAEGLTDSIKRYHSDNSTKAA-------WDSIQT 171
BLAST of leukocyte surface antigen cd53 vs. nr
Match: gi|829981278|ref|XP_012607108.1| (leukocyte surface antigen CD53 [Microcebus murinus]) HSP 1 Score: 65.4698 bits (158), Expect = 1.925e-8 Identity = 49/132 (37.12%), Postives = 74/132 (56.06%), Query Frame = 0 Query: 333 GCLVLGFGIYALVNNGQNDILIFDVDSSLYQNIHSNTAEIILVIVSGIIILVSFLGCCGAVLENRGVIFVYFTIMLITTVITTIGSTLVFT---KTIDDVTQPLLSSLQRYNP-NSTDVGPIQMTQVWDQVQ 460 GC +LGFGIY LV+N F V L+ N+ S T +LVIV II++V+FLGC G++ EN+ ++ +F ++LI + + L+F K + V + L+ S+QRY+ NST WD +Q Sbjct: 24 GCCILGFGIYLLVHNN------FGV---LFHNLPSLTLGNVLVIVGSIIMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTLAILLFVYEQKLNEYVAKGLMDSIQRYHSDNSTKAA-------WDSIQ 139
BLAST of leukocyte surface antigen cd53 vs. nr
Match: gi|584086676|ref|XP_006763054.1| (PREDICTED: leukocyte surface antigen CD53 [Myotis davidii]) HSP 1 Score: 65.0846 bits (157), Expect = 1.980e-8 Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = 0 Query: 333 GCLVLGFGIYALVNNGQNDILIFDVDSSLYQNIHSNTAEIILVIVSGIIILVSFLGCCGAVLENRGVIFVYFTIMLITTVITTIGSTLVFT---KTIDDVTQPLLSSLQRYNP-NSTDVGPIQMTQVWDQVQ 460 GC +LGFGIY LV+N +L+ N+ S T +LVIV II++V+FLGC G++ EN+ ++ +F ++LI + + L+F K D V + L S+QRY+ NST WD +Q Sbjct: 24 GCCILGFGIYFLVHNN---------FGALFHNLPSLTLGNVLVIVGSIIMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTLAILLFVYEQKLSDSVREGLTDSIQRYHSDNSTRAA-------WDSIQ 139
BLAST of leukocyte surface antigen cd53 vs. nr
Match: gi|432103950|gb|ELK30783.1| (Leukocyte surface antigen CD53 [Myotis davidii]) HSP 1 Score: 65.4698 bits (158), Expect = 2.128e-8 Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = 0 Query: 333 GCLVLGFGIYALVNNGQNDILIFDVDSSLYQNIHSNTAEIILVIVSGIIILVSFLGCCGAVLENRGVIFVYFTIMLITTVITTIGSTLVFT---KTIDDVTQPLLSSLQRYNP-NSTDVGPIQMTQVWDQVQ 460 GC +LGFGIY LV+N +L+ N+ S T +LVIV II++V+FLGC G++ EN+ ++ +F ++LI + + L+F K D V + L S+QRY+ NST WD +Q Sbjct: 41 GCCILGFGIYFLVHNN---------FGALFHNLPSLTLGNVLVIVGSIIMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTLAILLFVYEQKLSDSVREGLTDSIQRYHSDNSTRAA-------WDSIQ 156
BLAST of leukocyte surface antigen cd53 vs. nr
Match: gi|554530625|ref|XP_005860098.1| (PREDICTED: leukocyte surface antigen CD53 [Myotis brandtii] >gi|940742676|ref|XP_014314495.1| leukocyte surface antigen CD53 [Myotis lucifugus] >gi|1335142039|ref|XP_023612845.1| leukocyte surface antigen CD53 [Myotis lucifugus]) HSP 1 Score: 65.0846 bits (157), Expect = 2.156e-8 Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = 0 Query: 333 GCLVLGFGIYALVNNGQNDILIFDVDSSLYQNIHSNTAEIILVIVSGIIILVSFLGCCGAVLENRGVIFVYFTIMLITTVITTIGSTLVFT---KTIDDVTQPLLSSLQRYNP-NSTDVGPIQMTQVWDQVQ 460 GC +LGFGIY LV+N +L+ N+ S T +LVIV II++V+FLGC G++ EN+ ++ +F ++LI + + L+F K D V + L S+QRY+ NST WD +Q Sbjct: 24 GCCILGFGIYFLVHNNFG---------ALFHNLPSLTLGNVLVIVGSIIMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTLAILLFVYEQKLSDSVREGLTDSIQRYHSDNSTRAA-------WDSIQ 139 The following BLAST results are available for this feature:
BLAST of leukocyte surface antigen cd53 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of leukocyte surface antigen cd53 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 4
BLAST of leukocyte surface antigen cd53 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold675_size187964:124087..135478- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold675_size187964-snap-gene-0.32 ID=maker-scaffold675_size187964-snap-gene-0.32|Name=leukocyte surface antigen cd53|organism=Tigriopus kingsejongensis|type=gene|length=11392bp|location=Sequence derived from alignment at scaffold675_size187964:124087..135478- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'leukocyte surface antigen cd53' has the following synonyms
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