copa_canfa ame: full, maker-scaffold52_size450388-snap-gene-3.21 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of copa_canfa ame: full vs. L. salmonis genes
Match: EMLSAG00000004199 (supercontig:LSalAtl2s:LSalAtl2s221:488387:561813:1 gene:EMLSAG00000004199 transcript:EMLSAT00000004199 description:"maker-LSalAtl2s221-augustus-gene-5.19") HSP 1 Score: 122.094 bits (305), Expect = 1.431e-34 Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRG 56
MLTKFETKSPRVKGLAFHP+RPWILASLHNGVIQLWDYRMC LLEKFDEHEGP G
Sbjct: 1 MLTKFETKSPRVKGLAFHPKRPWILASLHNGVIQLWDYRMCXLLEKFDEHEGPXXG 56
BLAST of copa_canfa ame: full vs. L. salmonis genes
Match: EMLSAG00000000903 (supercontig:LSalAtl2s:LSalAtl2s1157:9447:26512:1 gene:EMLSAG00000000903 transcript:EMLSAT00000000903 description:"maker-LSalAtl2s1157-augustus-gene-0.18") HSP 1 Score: 50.0618 bits (118), Expect = 3.096e-9 Identity = 20/59 (33.90%), Postives = 33/59 (55.93%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRW 59
M + +S RVK HP PW+LASL+NG + +W+Y L++ + + PV ++
Sbjct: 7 MKRRLTARSDRVKSTDLHPVEPWMLASLYNGNVHIWNYESQQLVKSLEVXDLPVXAAKF 65
BLAST of copa_canfa ame: full vs. SwissProt
Match: gi|341940380|sp|Q8CIE6.2|COPA_MOUSE (RecName: Full=Coatomer subunit alpha; AltName: Full=Alpha-coat protein; Short=Alpha-COP; Contains: RecName: Full=Xenin; AltName: Full=Xenopsin-related peptide; Contains: RecName: Full=Proxenin) HSP 1 Score: 115.161 bits (287), Expect = 1.362e-30 Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL+FHP+RPWIL SLHNGVIQLWDYRMCTL++KFDEH+GPVRG + P + G D
Sbjct: 1 MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. SwissProt
Match: gi|2494888|sp|Q27954.1|COPA_BOVIN (RecName: Full=Coatomer subunit alpha; AltName: Full=Alpha-coat protein; Short=Alpha-COP; AltName: Full=HEP-COP; Short=HEPCOP; Contains: RecName: Full=Xenin; AltName: Full=Xenopsin-related peptide; Contains: RecName: Full=Proxenin) HSP 1 Score: 115.161 bits (287), Expect = 1.389e-30 Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL+FHP+RPWIL SLHNGVIQLWDYRMCTL++KFDEH+GPVRG + P + G D
Sbjct: 1 MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. SwissProt
Match: gi|205371746|sp|P53621.2|COPA_HUMAN (RecName: Full=Coatomer subunit alpha; AltName: Full=Alpha-coat protein; Short=Alpha-COP; AltName: Full=HEP-COP; Short=HEPCOP; Contains: RecName: Full=Xenin; AltName: Full=Xenopsin-related peptide; Contains: RecName: Full=Proxenin) HSP 1 Score: 115.161 bits (287), Expect = 1.389e-30 Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL+FHP+RPWIL SLHNGVIQLWDYRMCTL++KFDEH+GPVRG + P + G D
Sbjct: 1 MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. SwissProt
Match: gi|75337326|sp|Q9SJT9.1|COPA2_ARATH (RecName: Full=Coatomer subunit alpha-2; AltName: Full=Alpha-coat protein 2; Short=Alpha-COP 2) HSP 1 Score: 113.235 bits (282), Expect = 5.795e-30 Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL+FHP+RPWILASLH+GVIQLWDYRM TL+++FDEHEGPVRG + P + G D
Sbjct: 1 MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. SwissProt
Match: gi|146286088|sp|Q94A40.2|COPA1_ARATH (RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1) HSP 1 Score: 113.235 bits (282), Expect = 6.084e-30 Identity = 51/72 (70.83%), Postives = 59/72 (81.94%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL+FHP+RPWILASLH+GVIQLWDYRM TL+++FDEHEGPVRG + P + G D
Sbjct: 1 MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. SwissProt
Match: gi|75333114|sp|Q9AUR7.1|COPA2_ORYSJ (RecName: Full=Coatomer subunit alpha-2; AltName: Full=Alpha-coat protein 2; Short=Alpha-COP 2) HSP 1 Score: 111.694 bits (278), Expect = 2.350e-29 Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL+FHP+RPWILASLH+GVIQ+WDYRM TLL++FDEH+GPVRG + P + G D
Sbjct: 1 MLTKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. SwissProt
Match: gi|122234492|sp|Q0J3D9.1|COPA3_ORYSJ (RecName: Full=Coatomer subunit alpha-3; AltName: Full=Alpha-coat protein 3; Short=Alpha-COP 3) HSP 1 Score: 111.694 bits (278), Expect = 2.372e-29 Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL+FHP+RPWILASLH+GVIQ+WDYRM TLL++FDEH+GPVRG + P + G D
Sbjct: 1 MLTKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. SwissProt
Match: gi|75333115|sp|Q9AUR8.1|COPA1_ORYSJ (RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1) HSP 1 Score: 111.309 bits (277), Expect = 2.491e-29 Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL+FHP+RPWILASLH+GVIQ+WDYRM TLL++FDEH+GPVRG + P + G D
Sbjct: 1 MLTKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. SwissProt
Match: gi|74859321|sp|Q55FR9.1|COPA_DICDI (RecName: Full=Coatomer subunit alpha; AltName: Full=Alpha-coat protein; Short=Alpha-COP) HSP 1 Score: 105.145 bits (261), Expect = 4.184e-27 Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
ML KFETK+ RVKGL+FHP RPWILASLH+G I L+DYR+ TLLEKFDEHEGPVRG + P + G D
Sbjct: 1 MLYKFETKASRVKGLSFHPTRPWILASLHSGSIHLYDYRIKTLLEKFDEHEGPVRGINFHMTQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. SwissProt
Match: gi|74698003|sp|Q96WV5.1|COPA_SCHPO (RecName: Full=Putative coatomer subunit alpha; AltName: Full=Alpha-coat protein; Short=Alpha-COP) HSP 1 Score: 103.605 bits (257), Expect = 1.481e-26 Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFE++S R KG+AFHP +PWIL SLHNG IQLWDYRM TLL++FD H+GPVRG + P + G D
Sbjct: 3 MLTKFESRSSRAKGVAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPLFVSGGDD 74
BLAST of copa_canfa ame: full vs. nr
Match: gi|241069260|ref|XP_002408544.1| (coatomer alpha subunit, putative [Ixodes scapularis] >gi|215492523|gb|EEC02164.1| coatomer alpha subunit, putative [Ixodes scapularis]) HSP 1 Score: 116.701 bits (291), Expect = 6.910e-32 Identity = 54/72 (75.00%), Postives = 60/72 (83.33%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL+FHP+RPWILASLHNGVIQLWDYRMCTLL+KFDEH+GPVRG + P + G D
Sbjct: 1 MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLLDKFDEHDGPVRGICFHNQQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. nr
Match: gi|47208465|emb|CAF91036.1| (unnamed protein product, partial [Tetraodon nigroviridis]) HSP 1 Score: 114.39 bits (285), Expect = 8.693e-32 Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL+FHP+RPW+LASLHNGVIQLWDYRMCTL++KFDEH+GPVRG + P + G D
Sbjct: 1 MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. nr
Match: gi|1355908743|gb|PRD19978.1| (Coatomer subunit alpha [Nephila clavipes]) HSP 1 Score: 116.316 bits (290), Expect = 1.248e-31 Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL+FHP+RPWILASLHNG+IQLWDYRMCTLL+KFDEH+GPVRG + P + G D
Sbjct: 1 MLTKFETKSARVKGLSFHPKRPWILASLHNGIIQLWDYRMCTLLDKFDEHDGPVRGICFHNQQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. nr
Match: gi|1199344473|ref|XP_012716257.2| (coatomer subunit alpha-like, partial [Fundulus heteroclitus]) HSP 1 Score: 114.775 bits (286), Expect = 1.648e-31 Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL+FHP+RPW+LASLHNGVIQLWDYRMCTL++KFDEH+GPVRG + P + G D
Sbjct: 1 MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. nr
Match: gi|617399951|ref|XP_007552063.1| (PREDICTED: coatomer subunit alpha [Poecilia formosa] >gi|961989703|ref|XP_014873404.1| PREDICTED: coatomer subunit alpha-like [Poecilia latipinna]) HSP 1 Score: 114.775 bits (286), Expect = 1.691e-31 Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL+FHP+RPW+LASLHNGVIQLWDYRMCTL++KFDEH+GPVRG + P + G D
Sbjct: 1 MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. nr
Match: gi|1173911191|gb|OQR75116.1| (coatomer subunit alpha-like, partial [Tropilaelaps mercedesae]) HSP 1 Score: 116.701 bits (291), Expect = 2.756e-31 Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL+FHP+RPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRG + P + G D
Sbjct: 1 MLTKFETKSARVKGLSFHPRRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGICFHNQQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. nr
Match: gi|908484459|ref|XP_013093111.1| (PREDICTED: coatomer subunit alpha-like [Biomphalaria glabrata]) HSP 1 Score: 113.62 bits (283), Expect = 3.267e-31 Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL FHP+RPW LASLHNGVIQLWDYRMCTL++KFDEH+GPVRG + P + G D
Sbjct: 1 MLTKFETKSARVKGLTFHPKRPWALASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGINFHQQQPLFVSGGDD 72
BLAST of copa_canfa ame: full vs. nr
Match: gi|665794506|ref|XP_008544952.1| (PREDICTED: coatomer subunit alpha [Microplitis demolitor]) HSP 1 Score: 122.479 bits (306), Expect = 1.103e-30 Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRG 56
MLTKFETKS RVKGL+FHP+RPWILASLHNGVIQLWDYRMCTLLEKFDEH+GPVRG
Sbjct: 1 MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLLEKFDEHDGPVRG 56
BLAST of copa_canfa ame: full vs. nr
Match: gi|645026828|ref|XP_008204705.1| (PREDICTED: coatomer subunit alpha [Nasonia vitripennis]) HSP 1 Score: 122.094 bits (305), Expect = 1.520e-30 Identity = 54/72 (75.00%), Postives = 59/72 (81.94%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRGTRWCGCSPDGPASGTD 72
MLTKFETKS RVKGL+FHP+RPWIL SLHNGVIQLWDYRMCTLLEKFDEH+GPVRG + P + G D
Sbjct: 1 MLTKFETKSARVKGLSFHPKRPWILVSLHNGVIQLWDYRMCTLLEKFDEHDGPVRGICFHSQQPIFVSGGDD 72
BLAST of copa_canfa ame: full vs. nr
Match: gi|952513295|gb|KRT79894.1| (WD40 domain-containing protein, partial [Oryctes borbonicus]) HSP 1 Score: 122.094 bits (305), Expect = 1.583e-30 Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0
Query: 1 MLTKFETKSPRVKGLAFHPQRPWILASLHNGVIQLWDYRMCTLLEKFDEHEGPVRG 56
MLTKFETKS RVKGL+FHP+RPWILASLHNGVIQLWDYRMCTLLEKFDEH+GPVRG
Sbjct: 26 MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLLEKFDEHDGPVRG 81 The following BLAST results are available for this feature:
BLAST of copa_canfa ame: full vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 2
BLAST of copa_canfa ame: full vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of copa_canfa ame: full vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold52_size450388:302855..303195- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold52_size450388-snap-gene-3.21 ID=maker-scaffold52_size450388-snap-gene-3.21|Name=copa_canfa ame: full|organism=Tigriopus kingsejongensis|type=gene|length=341bp|location=Sequence derived from alignment at scaffold52_size450388:302855..303195- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'copa_canfa ame: full' has the following synonyms
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