39s ribosomal protein mitochondrial, maker-scaffold304_size215464-snap-gene-0.14 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Match: EMLSAG00000009486 (supercontig:LSalAtl2s:LSalAtl2s611:237141:237838:-1 gene:EMLSAG00000009486 transcript:EMLSAT00000009486 description:"augustus_masked-LSalAtl2s611-processed-gene-2.4") HSP 1 Score: 93.5893 bits (231), Expect = 2.564e-23 Identity = 51/128 (39.84%), Postives = 80/128 (62.50%), Query Frame = 0 Query: 187 KVISLVDEQIKNETYGRLFAVIYLDDRQFKVTAGDLVMMNHDMGIVPGTRVVLDKTILVGGRDFSLVGRPVLPRDLVQVDATVVEKSLSKPIVHMISGRRLMKSRIRFFQERQTTLRINNIRLMCSIE 314 + I V+ QI+++ +GRLFA++ L Q KVT DL+M+ D+G G +++L+K +L+G +DF+L+GRP+LPRDL +V+ATVVEK+ S+ K R+ F + R N++R C E Sbjct: 50 ETIGSVNTQIRDKNHGRLFAIVSLRSHQHKVTDEDLLMIQGDIGAPVGKKIILNKLLLIGSQDFTLIGRPLLPRDLARVEATVVEKAPSET-----------KVRLDFIR------RNNHLRYKCKYE 160
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|122069625|sp|Q2TBS2.1|RM21_BOVIN (RecName: Full=39S ribosomal protein L21, mitochondrial; Short=L21mt; Short=MRP-L21; Flags: Precursor) HSP 1 Score: 107.842 bits (268), Expect = 8.392e-27 Identity = 54/124 (43.55%), Postives = 81/124 (65.32%), Query Frame = 0 Query: 186 TKVISLVDEQIKNETYGRLFAVIYLDDRQFKVTAGDLVMMNHDMGIVPGTRVVLDKTILVGGRDFSLVGRPVLPRDLVQVDATVVEKSLSKPIVHMISGRRLMKSRIRFFQERQTTLRINNIRL 309 +V+ V+E I YGRLFAV++ Q+KVT+ DL+++ + + I G R+ ++K +LVG DF+L+GRP+L +DLV+V+ATV+EK+ S P V+M +R R R QT LRIN I + Sbjct: 81 AEVVEKVNELIAGGQYGRLFAVVHFASHQWKVTSEDLILIENKLDIACGERIRMEKVLLVGADDFTLLGRPLLGKDLVRVEATVIEKTESWPRVNMRFQKRKNYKRKRIIVNPQTVLRINTIEI 204
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|229462820|sp|Q7Z2W9.2|RM21_HUMAN (RecName: Full=39S ribosomal protein L21, mitochondrial; Short=L21mt; Short=MRP-L21; AltName: Full=Mitochondrial large ribosomal subunit protein bL21m; Flags: Precursor) HSP 1 Score: 101.293 bits (251), Expect = 2.638e-24 Identity = 51/123 (41.46%), Postives = 83/123 (67.48%), Query Frame = 0 Query: 187 KVISLVDEQIKNETYGRLFAVIYLDDRQFKVTAGDLVMMNHDMGIVPGTRVVLDKTILVGGRDFSLVGRPVLPRDLVQVDATVVEKSLSKPIVHMISGRRLMKSRIRFFQERQTTLRINNIRL 309 +V+ V+E I YGRLFAV++ RQ+KVT+ DL+++ +++ + G R+ L+K +LVG +F+L+G+P+L +DLV+V+ATV+EK+ S P + M +R + R QT LRIN+I + Sbjct: 78 EVVKKVNEMIVTGQYGRLFAVVHFASRQWKVTSEDLILIGNELDLACGERIRLEKVLLVGADNFTLLGKPLLGKDLVRVEATVIEKTESWPRIIMRFRKRKNFKKKRIVTTPQTVLRINSIEI 200
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Match: gi|81904758|sp|Q9D1N9.1|RM21_MOUSE (RecName: Full=39S ribosomal protein L21, mitochondrial; Short=L21mt; Short=MRP-L21; Flags: Precursor) HSP 1 Score: 99.7525 bits (247), Expect = 1.108e-23 Identity = 50/123 (40.65%), Postives = 82/123 (66.67%), Query Frame = 0 Query: 187 KVISLVDEQIKNETYGRLFAVIYLDDRQFKVTAGDLVMMNHDMGIVPGTRVVLDKTILVGGRDFSLVGRPVLPRDLVQVDATVVEKSLSKPIVHMISGRRLMKSRIRFFQERQTTLRINNIRL 309 +V+ V+E I YGRLFAV++ Q+KVTA DL+++ +++ I G R+ L+K +LVG +F+L+G+P+L ++LV+V+ATV+EK+ S P ++M +R + + QT LRIN I + Sbjct: 82 EVVKRVNELIATGQYGRLFAVVHFASHQWKVTAEDLILIENELDIKCGERIRLEKVLLVGADNFTLLGKPLLRKELVRVEATVIEKTESWPKINMKFRKRKNFRKKKIIVNPQTILRINTIEI 204
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|974106383|ref|XP_015252180.1| (PREDICTED: 39S ribosomal protein L21, mitochondrial [Cyprinodon variegatus]) HSP 1 Score: 121.324 bits (303), Expect = 1.455e-29 Identity = 68/178 (38.20%), Postives = 102/178 (57.30%), Query Frame = 0 Query: 132 PEALARSQGNIFGSVCPEGKFRSATTGAKFKASSKSETRPEAGNGRRLGMAEGPTKVISLVDEQIKNETYGRLFAVIYLDDRQFKVTAGDLVMMNHDMGIVPGTRVVLDKTILVGGRDFSLVGRPVLPRDLVQVDATVVEKSLSKPIVHMISGRRLMKSRIRFFQERQTTLRINNIRL 309 P AR+Q ++ G + P + A S E R V+S V+++I+ + +GRLFAV++L RQ+KVT DL+++ + + G R++L+K +LVG DFSLVGRP+L ++LV+V ATV+EK+ S P VHM+ +R R R + QT LRIN+I L Sbjct: 25 PVCAARTQSSVSGHLLPRTSLSRPPWSEQSCAVSAEEERSRHA------------AVVSAVNQRIQKQDFGRLFAVVHLAGRQWKVTNEDLILIENHIEADCGERIILEKVLLVGAEDFSLVGRPLLGKELVRVRATVIEKTQSWPKVHMVFWKRHRFQRKRIIVQPQTVLRINSIEL 190
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|170060659|ref|XP_001865900.1| (39S ribosomal protein L21, mitochondrial [Culex quinquefasciatus] >gi|167879081|gb|EDS42464.1| 39S ribosomal protein L21, mitochondrial [Culex quinquefasciatus]) HSP 1 Score: 115.161 bits (287), Expect = 3.830e-27 Identity = 56/122 (45.90%), Postives = 81/122 (66.39%), Query Frame = 0 Query: 188 VISLVDEQIKNETYGRLFAVIYLDDRQFKVTAGDLVMMNHDMGIVPGTRVVLDKTILVGGRDFSLVGRPVLPRDLVQVDATVVEKSLSKPIVHMISGRRLMKSRIRFFQERQTTLRINNIRL 309 V+ V+ Q+ + + GRLFAV+ L +QFK+T+GD++++ G R+ LDK +L GG+DFSL+GRP++P LV V AT++EKSLS H RR RI FF+ +QT +RIN+I L Sbjct: 60 VVKAVNAQLASASEGRLFAVVQLCGKQFKITSGDIIIVEGYWPPTNGDRIRLDKVLLAGGKDFSLIGRPLVPAGLVDVQATIIEKSLSHTKTHFRKKRRKQYMRINFFRAQQTMIRINSIEL 181
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|170071612|ref|XP_001869957.1| (39S ribosomal protein L21, mitochondrial [Culex quinquefasciatus] >gi|167867547|gb|EDS30930.1| 39S ribosomal protein L21, mitochondrial [Culex quinquefasciatus]) HSP 1 Score: 115.161 bits (287), Expect = 3.953e-27 Identity = 56/122 (45.90%), Postives = 81/122 (66.39%), Query Frame = 0 Query: 188 VISLVDEQIKNETYGRLFAVIYLDDRQFKVTAGDLVMMNHDMGIVPGTRVVLDKTILVGGRDFSLVGRPVLPRDLVQVDATVVEKSLSKPIVHMISGRRLMKSRIRFFQERQTTLRINNIRL 309 V+ V+ Q+ + + GRLFAV+ L +QFK+T+GD++++ G R+ LDK +L GG+DFSL+GRP++P LV V AT++EKSLS H RR RI FF+ +QT +RIN+I L Sbjct: 60 VVKAVNAQLASASEGRLFAVVQLCGKQFKITSGDIIIVEGYWPPTNGDRIRLDKVLLAGGKDFSLIGRPLVPAGLVDVQATIIEKSLSHTKTHFRKKRRKQYMRINFFRAQQTMIRINSIEL 181
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|831542854|ref|XP_012725289.1| (39S ribosomal protein L21, mitochondrial [Fundulus heteroclitus]) HSP 1 Score: 114.775 bits (286), Expect = 5.086e-27 Identity = 64/174 (36.78%), Postives = 97/174 (55.75%), Query Frame = 0 Query: 136 ARSQGNIFGSVCPEGKFRSATTGAKFKASSKSETRPEAGNGRRLGMAEGPTKVISLVDEQIKNETYGRLFAVIYLDDRQFKVTAGDLVMMNHDMGIVPGTRVVLDKTILVGGRDFSLVGRPVLPRDLVQVDATVVEKSLSKPIVHMISGRRLMKSRIRFFQERQTTLRINNIRL 309 AR+Q ++ G + P + S E R V+S V+E+I+ + +GRLFAV++ RQ+KVT DL+++ + + G R+ L+K +LVG DF+LVGRP+L ++L +V ATV+EK+ S P VHM+ RR R + + QT LRIN+I L Sbjct: 29 ARAQSSVSGDLLPRTSLSRPPWSEQSSVVSAEEERSRHA------------AVVSTVNERIQRQDFGRLFAVVHFAGRQWKVTNEDLILIENHVEAECGDRIYLEKVLLVGAEDFTLVGRPLLGKELTRVKATVIEKTESWPKVHMVFWRRHRFQRKKIIVQPQTVLRINSIEL 190
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1188107587|ref|XP_020775785.1| (39S ribosomal protein L21, mitochondrial [Boleophthalmus pectinirostris]) HSP 1 Score: 114.39 bits (285), Expect = 7.108e-27 Identity = 57/122 (46.72%), Postives = 84/122 (68.85%), Query Frame = 0 Query: 188 VISLVDEQIKNETYGRLFAVIYLDDRQFKVTAGDLVMMNHDMGIVPGTRVVLDKTILVGGRDFSLVGRPVLPRDLVQVDATVVEKSLSKPIVHMISGRRLMKSRIRFFQERQTTLRINNIRL 309 V++ V+ I + +GRLFAV++ RQ+KVT DL+++ + + G R+ L+K ++VG DF+LVGRP+L +DLV V+ATV+EK+ S+P VHM+ RR R + + QT LRINNIRL Sbjct: 75 VVTAVNSIISGQDFGRLFAVVHFAGRQWKVTDEDLILVENHIEAECGDRIRLEKVLMVGAHDFTLVGRPLLTKDLVCVEATVIEKTESRPKVHMMFLRRKRFQRKKIIVQPQTVLRINNIRL 196
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1109007183|ref|XP_010746684.2| (PREDICTED: 39S ribosomal protein L21, mitochondrial [Larimichthys crocea] >gi|808860992|gb|KKF12908.1| 39S ribosomal protein L21, mitochondrial [Larimichthys crocea]) HSP 1 Score: 114.39 bits (285), Expect = 7.695e-27 Identity = 56/122 (45.90%), Postives = 85/122 (69.67%), Query Frame = 0 Query: 188 VISLVDEQIKNETYGRLFAVIYLDDRQFKVTAGDLVMMNHDMGIVPGTRVVLDKTILVGGRDFSLVGRPVLPRDLVQVDATVVEKSLSKPIVHMISGRRLMKSRIRFFQERQTTLRINNIRL 309 V+S V++QI + YGRLFAV++ RQ+KVT DL+++ + + G R+ ++K +LVG DF+L+GRP+L ++LV+V+ATV+EK+ S P VHM +R R R + QT LRIN+I+L Sbjct: 68 VVSAVNQQINQQDYGRLFAVVHFAGRQWKVTDEDLILIENHIEAECGERIRMEKVLLVGAEDFTLIGRPLLGKELVRVEATVIEKTESWPKVHMRFWKRHRFQRKRIIIQPQTVLRINSIQL 189
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1338753372|ref|XP_023672833.1| (39S ribosomal protein L21, mitochondrial isoform X1 [Paramormyrops kingsleyae]) HSP 1 Score: 114.005 bits (284), Expect = 1.408e-26 Identity = 58/122 (47.54%), Postives = 82/122 (67.21%), Query Frame = 0 Query: 188 VISLVDEQIKNETYGRLFAVIYLDDRQFKVTAGDLVMMNHDMGIVPGTRVVLDKTILVGGRDFSLVGRPVLPRDLVQVDATVVEKSLSKPIVHMISGRRLMKSRIRFFQERQTTLRINNIRL 309 VIS V+ + E YGRLFAV++ RQ+KVT DL+++ + + G R+ L+K +LVG DF+L+GRP+L R+LV V+ATV+EK+ S P+VHM +R R R + QT LRIN IR+ Sbjct: 87 VISKVNNILATEKYGRLFAVVHFASRQWKVTNEDLILIENHIDAECGERIRLEKVLLVGSADFTLIGRPLLGRNLVSVEATVIEKTKSWPMVHMRFWKRHRYQRKRIIVQPQTVLRINAIRV 208
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1338753374|ref|XP_023672834.1| (39S ribosomal protein L21, mitochondrial isoform X2 [Paramormyrops kingsleyae]) HSP 1 Score: 114.005 bits (284), Expect = 1.640e-26 Identity = 58/122 (47.54%), Postives = 82/122 (67.21%), Query Frame = 0 Query: 188 VISLVDEQIKNETYGRLFAVIYLDDRQFKVTAGDLVMMNHDMGIVPGTRVVLDKTILVGGRDFSLVGRPVLPRDLVQVDATVVEKSLSKPIVHMISGRRLMKSRIRFFQERQTTLRINNIRL 309 VIS V+ + E YGRLFAV++ RQ+KVT DL+++ + + G R+ L+K +LVG DF+L+GRP+L R+LV V+ATV+EK+ S P+VHM +R R R + QT LRIN IR+ Sbjct: 86 VISKVNNILATEKYGRLFAVVHFASRQWKVTNEDLILIENHIDAECGERIRLEKVLLVGSADFTLIGRPLLGRNLVSVEATVIEKTKSWPMVHMRFWKRHRYQRKRIIVQPQTVLRINAIRV 207
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|1143426332|ref|XP_019967449.1| (PREDICTED: 39S ribosomal protein L21, mitochondrial [Paralichthys olivaceus] >gi|1143426334|ref|XP_019967450.1| PREDICTED: 39S ribosomal protein L21, mitochondrial [Paralichthys olivaceus]) HSP 1 Score: 113.62 bits (283), Expect = 1.870e-26 Identity = 57/122 (46.72%), Postives = 85/122 (69.67%), Query Frame = 0 Query: 188 VISLVDEQIKNETYGRLFAVIYLDDRQFKVTAGDLVMMNHDMGIVPGTRVVLDKTILVGGRDFSLVGRPVLPRDLVQVDATVVEKSLSKPIVHMISGRRLMKSRIRFFQERQTTLRINNIRL 309 V+S V+++I+ + +GRLFAV++ RQ+KVTA DLV++ + G R+ ++K +LVG DF+LVGRP+L ++LV+V+ATV+EK+ S P VHM RR R + + QT LRIN+I L Sbjct: 85 VVSAVNQRIQRQDFGRLFAVVHFAGRQWKVTAEDLVLIESHVEAECGERIRMEKVLLVGAEDFTLVGRPLLGKELVRVEATVLEKTESWPKVHMQFWRRHRFQRKKIIIQPQTVLRINSIHL 206
BLAST of 39s ribosomal protein mitochondrial vs. nr
Match: gi|617468928|ref|XP_007574707.1| (PREDICTED: 39S ribosomal protein L21, mitochondrial [Poecilia formosa] >gi|961909640|ref|XP_014905376.1| PREDICTED: 39S ribosomal protein L21, mitochondrial [Poecilia latipinna]) HSP 1 Score: 113.235 bits (282), Expect = 2.240e-26 Identity = 63/174 (36.21%), Postives = 99/174 (56.90%), Query Frame = 0 Query: 136 ARSQGNIFGSVCPEGKFRSATTGAKFKASSKSETRPEAGNGRRLGMAEGPTKVISLVDEQIKNETYGRLFAVIYLDDRQFKVTAGDLVMMNHDMGIVPGTRVVLDKTILVGGRDFSLVGRPVLPRDLVQVDATVVEKSLSKPIVHMISGRRLMKSRIRFFQERQTTLRINNIRL 309 AR+Q ++ G + P S + S E R V+S V+++I+ + +GRLFAV++ RQ+KVT DL+++ + + G R+ L+K +LVG DF+LVGRP+L ++LV+V ATV+EK+ S P +HM+ +R + R + QT LRIN+I L Sbjct: 32 ARTQSSVSGDLLPRTSLSSPPWSEQTSFVSAEEERSRHA------------AVVSTVNDRIERQDFGRLFAVVHFAARQWKVTNEDLILVENHIEAECGDRIYLEKVLLVGAEDFTLVGRPLLGKELVRVKATVIEKTESCPKIHMVFWKRHRFQKKRTIVQPQTVLRINSIEL 193 The following BLAST results are available for this feature:
BLAST of 39s ribosomal protein mitochondrial vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 1
BLAST of 39s ribosomal protein mitochondrial vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 3
BLAST of 39s ribosomal protein mitochondrial vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold304_size215464:21120..24986- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold304_size215464-snap-gene-0.14 ID=maker-scaffold304_size215464-snap-gene-0.14|Name=39s ribosomal protein mitochondrial|organism=Tigriopus kingsejongensis|type=gene|length=3867bp|location=Sequence derived from alignment at scaffold304_size215464:21120..24986- (Tigriopus kingsejongensis)back to top Synonyms
The feature '39s ribosomal protein mitochondrial' has the following synonyms
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