amino acid abc transporter, maker-scaffold1179_size56971-snap-gene-0.13 (gene) Tigriopus kingsejongensis

Overview
Nameamino acid abc transporter
Unique Namemaker-scaffold1179_size56971-snap-gene-0.13
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of amino acid abc transporter vs. nr
Match: gi|1325327153|ref|XP_023345428.1| (uncharacterized protein LOC111714527 [Eurytemora affinis])

HSP 1 Score: 79.337 bits (194), Expect = 6.745e-12
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 0 
Query:  348 ELSSPDLGVDVGSSDPSFSSLERATAAKLQLGHPLDQVRSKNRVPIDSMLVENRQLRHERDLLLQKLVRSKGALKETLDRLTTSNQQKQDH-LSPQPRRRILS 449
            ++SSPDLGVDV  SDP FSSLER      ++G           + +D +++ENR LR E+D+L QKLVRSK AL++TL RL+ +N  KQD  +SP P RR LS
Sbjct:  543 DVSSPDLGVDV-ESDP-FSSLERG----YKVGS----------LAVDKLILENRNLRREKDVLGQKLVRSKAALQDTLSRLSRANLHKQDQVVSPAPVRRPLS 629
The following BLAST results are available for this feature:
BLAST of amino acid abc transporter vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of amino acid abc transporter vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of amino acid abc transporter vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 1
Match NameE-valueIdentityDescription
gi|1325327153|ref|XP_023345428.1|6.745e-1250.49uncharacterized protein LOC111714527 [Eurytemora a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold1179_size56971supercontigscaffold1179_size56971:18730..20649 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteP:transport
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
maker-scaffold1179_size56971-snap-gene-0.13-mRNA-1maker-scaffold1179_size56971-snap-gene-0.13-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold1179_size56971:18730..20649+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>maker-scaffold1179_size56971-snap-gene-0.13 ID=maker-scaffold1179_size56971-snap-gene-0.13|Name=amino acid abc transporter|organism=Tigriopus kingsejongensis|type=gene|length=1920bp|location=Sequence derived from alignment at scaffold1179_size56971:18730..20649+ (Tigriopus kingsejongensis)
GTTGGAGTGTCTTCTGTCTGGCATTGGTGACCTCTTCTCCGCTATGAGTG
ATCTGGGATACGAGCTGGATCTTTCCGACTCATTTTCGGACTCGGGTCGA
GGATCCGATGAAGACGATGACGGTGACGATACCGAGATCGAGCACAGCTT
CGTCAAGGACGAAATTCGCTTTTTCATCTGCTCTCAATGCTCGGACGTGG
TGTGTCAAGATGTGGAGAGATGCTTGCACCGCTGTGGCAAGCTCATCTTG
GCCTCAATCTCGACTCTGAGACGATTGCGCAAAATTTGCTGCCACTCTCG
CTCCCGATGGCACGAGGCCACACAGAAGTTGGCCAAGCAGAGCAACCAGA
TCTCCCAGCTTGAGGAGACGGTCGCCCTGCTCCATGGTCAAGTGGCAGTC
AAGGACAAAGTCCAAGCCGATCTGGAGGTCAATCAGAATGAGCTCAACAC
GAAGCACAAGGAGCTCCAGGAAGCCCATGTCAAGCTCAACGAGAATTACA
AACTGGTGGCCGAGCTGAGCAACGAGAACCTCCGCCTCATCAGCGAGAAG
GTCAAGGTAGAGGAACTCAACGAGAGCTTAAAGCACGAACATGTGCAGCT
ACGAGCCGAGATGAGAGAGAGTCACGGAAAGATGCTCCCCCATCATTCAG
GGGTGCGAGTGTCCAGGCAATCGGAAGATCCGGACCAGACTTCCTCGGGA
GGGGATCCCCATCATCTCAAGCCGTGGAACATGGTTCCTCTAAGTAAGAC
ACGGATGGGAGTGCCCATGATATCTAGACCCGAGAGACTTATTACGTTGA
ATTCGACTCTTATTCCAGATGCCTCCTCGCCGGAGACCACCTCCTCGTCC
TTTGACTTCTATGACAGTTCAGCACGACGTGGCTCGGGAAGTTTGGCCAC
CACGCCCACTGTGCCCCGAAGGAGCCTTTCCACTCAGTTCGTGGAAGCCC
CATTGGGCGTCCACCGACAGTTTGAGCGAGTCGGCGTCTCATCCCGACCC
AAGATCACGCAGCACACTGGGAAGAAGACGCGATCTTCCGTGAGTTGAGC
CAAGGCCGACTAAGGGCACGCCTTTTTTATCATTGGGCCACTATTTCAGG
ACCACGAGCCAGCCTTTGCCCGATCTTACTCGAATTTGGAGCCGCGACGC
TCCTACTTGTCCAAGATCCAACCCAGCGAGCTGAGCTCACCGGATTTGGG
GGTGGACGTGGGCTCGTCAGATCCCTCCTTCTCCAGCTTGGAGCGGGCAA
CGGCGGCCAAGCTGCAACTCGGTCACCCGCTGGATCAAGTCCGATCTAGT
AAGTGGGTCCAGGCAGGGAAGGCCAAGAGAGCAAATGTTGGCTATGGTTT
GGCCGGTAATAAGTTAAAAAGAGGTGAAGGCGGCTGTCACTTCATGCCCT
GGCATCGGCGCATGTATGCCTGATTTTCGACCATCTGCTTGACTATTTTT
CGCCTCACAATCAAGAAGCTATTCCTTTCTCTCTCACAATTGCCTGGATC
AAACCAGGGAAATGGGGTCACAGAGTGATTTTTTGCCTTCTTTGACCATT
TCTAGAGAACCGGGTGCCCATCGATTCCATGTTGGTGGAGAATCGCCAGC
TTCGCCATGAACGAGACTTGCTCCTCCAGAAGTTGGTACGCTCCAAAGGC
GCGCTCAAGGAGACCCTAGACAGGTTGACCACCTCGAACCAACAAAAGCA
AGACCATTTGTCACCTCAGCCTCGGCGACGCATCTTGTCCTCGTCGTCGG
TGCTCCAATGCATTGGTGCCAGTCCGTCACGCTCTCGGGTCACGCAAGAT
CTGCTGGAATTTTCCCGCACTCACTATGGAGGCTCTCAAGCGGCTCAGCA
GCTGAGCAATGCCTCTTCCAGTGTGGGCTATGCTAAGCGACCCAAGAGCA
GACGGAATTCAAATATGTCC
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Synonyms
The feature 'amino acid abc transporter' has the following synonyms
Synonym
Tk06627
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