|
|
Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001046 | NRAMP family | PRINTS | PR00447 | NATRESASSCMP | coord: 145..171
score: 73.78
coord: 252..275
score: 73.17
coord: 384..403
score: 87.0
coord: 175..194
score: 66.2
coord: 444..463
score: 59.0
coord: 200..221
score: 60.18
coord: 412..429
score: 55.11 |
| IPR001046 | NRAMP family | PFAM | PF01566 | Nramp | coord: 86..474
e-value: 6.7E-111
score: 370.6 |
| IPR001046 | NRAMP family | TIGRFAM | TIGR01197 | TIGR01197 | coord: 64..468
e-value: 7.2E-164
score: 543.6 |
| IPR001046 | NRAMP family | PANTHER | PTHR11706 | MANGANESE TRANSPORTER | coord: 26..546 |
| IPR001046 | NRAMP family | HAMAP | MF_00221 | NRAMP | coord: 53..500
score: 36.3 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..15 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..29 |
| None | No IPR available | PANTHER | PTHR11706:SF73 | PROTEIN MALVOLIO | coord: 26..546 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 203..223 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 497..507 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 468..478 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 224..247 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 357..382 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 414..433 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 479..496 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 101..123 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 292..319 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 272..291 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 535..567 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 508..534 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 197..202 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 248..271 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 124..142 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 434..444 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 171..175 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 82..100 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 61..81 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 176..196 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 143..170 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 383..413 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 1..60 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 320..356 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 445..467 |
| None | No IPR available | TMHMM | TMhelix | | coord: 413..430 |
| None | No IPR available | TMHMM | TMhelix | | coord: 202..224 |
| None | No IPR available | TMHMM | TMhelix | | coord: 445..467 |
| None | No IPR available | TMHMM | TMhelix | | coord: 358..380 |
| None | No IPR available | TMHMM | TMhelix | | coord: 176..195 |
| None | No IPR available | TMHMM | TMhelix | | coord: 102..124 |
| None | No IPR available | TMHMM | TMhelix | | coord: 512..534 |
| None | No IPR available | TMHMM | TMhelix | | coord: 480..502 |
| None | No IPR available | TMHMM | TMhelix | | coord: 248..270 |
| None | No IPR available | TMHMM | TMhelix | | coord: 144..166 |
| None | No IPR available | TMHMM | TMhelix | | coord: 291..313 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk04087 ID=Tk04087|Name=Tk04087|organism=Tigriopus kingsejongensis|type=polypeptide|length=567bp
LSEAQSRISSRVSMSIESHDSKDPVPQIKSRNKRAVTINDTYMEDEKIVI
PDELIDSTSSFSWRTLWLFAGPGWLMSIAYLDPGNIESDLQSGALGQYRL
LWVLMWATILGMVMQRLSARLGVVTGKHLAQVCYEQYPKVPRVILWIMVE
IAIIGSDMQEVIGTAIAIYLLSQKIIPLWAGTLITIVDTFTFLFLDKYGL
RKLEFFFAALIAIMAISFGYNYFVDIPDQVGVLKGLFVPWDFTYSSEVLL
QAVAAVGAIIMPHNLYLHSALVKTRAIDRDNKQAVSLANKYYFIEGCIAL
FVSFILNLFVVSVFGGGLFETTYSQAYNSCLQHDAMDVFYDVFDRPELAN
EYIDADLYIGGVFLGCTFGVACTYIWAVGILASGQSSTMTGTYSGQFVME
GFLNLKWKRWQRVLLTRTIAMIPTFSVAFFSDINDLTGMNDVLNAIMSIQ
LPFAVIPTITFTSSRVIMGDFANGPIMKAFVALLAVIIICINMFFVGEFV
STSLPHVWYVYVLVAIFAVFYFVFIAYLTVPLLVHMGFESLLKFAWIRYY
YWFDDLMEYDEKKSPLE back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001046 | NRAMP_fam |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046873 | metal ion transmembrane transporter activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0030001 | metal ion transport |
|
