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Associated RNAi Experiments
InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 405..425 |
| None | No IPR available | COILS | Coil | Coil | coord: 875..895 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1053..1092 |
| None | No IPR available | PANTHER | PTHR11467 | HISTONE H1/H5 | coord: 676..881 |
| None | No IPR available | PANTHER | PTHR11467 | HISTONE H1/H5 | coord: 206..411 |
| None | No IPR available | PANTHER | PTHR11467:SF90 | HISTONE H1 | coord: 676..881
coord: 206..411 |
| IPR005818 | Linker histone H1/H5, domain H15 | SMART | SM00526 | h15plus2 | coord: 222..290
e-value: 4.3E-18
score: 76.1
coord: 692..760
e-value: 4.3E-18
score: 76.1 |
| IPR005818 | Linker histone H1/H5, domain H15 | PFAM | PF00538 | Linker_histone | coord: 695..770
e-value: 3.6E-23
score: 81.6
coord: 225..300
e-value: 3.6E-23
score: 81.6 |
| IPR005818 | Linker histone H1/H5, domain H15 | PROSITE | PS51504 | H15 | coord: 694..771
score: 26.846 |
| IPR005818 | Linker histone H1/H5, domain H15 | PROSITE | PS51504 | H15 | coord: 224..301
score: 26.846 |
| IPR005818 | Linker histone H1/H5, domain H15 | CDD | cd00073 | H15 | coord: 222..303
e-value: 5.95147E-13
score: 63.4091 |
| IPR005818 | Linker histone H1/H5, domain H15 | CDD | cd00073 | H15 | coord: 692..773
e-value: 5.95147E-13
score: 63.4091 |
| IPR036388 | Winged helix-like DNA-binding domain superfamily | GENE3D | 1.10.10.10 | | coord: 219..312
e-value: 2.6E-24
score: 87.2
coord: 689..782
e-value: 2.6E-24
score: 87.2 |
| IPR036390 | Winged helix DNA-binding domain superfamily | SUPERFAMILY | 46785 | "Winged helix" DNA-binding domain | coord: 223..307 |
| IPR036390 | Winged helix DNA-binding domain superfamily | SUPERFAMILY | 46785 | "Winged helix" DNA-binding domain | coord: 693..777 |
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Tk08387 ID=Tk08387|Name=Tk08387|organism=Tigriopus kingsejongensis|type=polypeptide|length=1092bp
METWRAFHSQDGPDGSRNALGQVLFPSNVATRSTRSEAAGVVSPHLPYAA
NTLVDNGIAMWNKFPALREASTKRMASNPGARHFKARNEWKSIVRYTTKG
FKCRELTGQQGNKYQTGHREKIKRKSTGATGDLVKEANLSHESMNGRTLR
RRSPKPQAPSACFGRISTSKKSSINPKMTLTAVAASPVVPKTNVSDKVVI
KKASTKVSAKAPKSAKVVAKVTPAHPPYGRMVLEALHSIKDRKGSSRQAL
LKYIMSNYEVGKDQKPVNNHLKKALVAAAKKGSIKNVGQGKGAAGSFKLS
EKAMQMQANAAEQQADQEPAPQPSRKRPQSGSDAAPAVKRAKKSSAAKTP
TKAAVKAKPQVKAAQPSTLVPEVNGAQATPKKRWGKRQEQAQTKNNNQEK
PSQDKPKLQARRKVAQKEAQEVQAQEAPVTVQETPAPAQKAHAAKPQVPA
PVQKAQKKSEDAPEAAQPTRRGQKSANSRQSQKSPQSQEESSPQPQRASR
PGRSNPKSKQSEDQVQKAKPAPAQKARQARQRLQTHVDSAPAIQISQPAE
QGEARPQTPNMGAPKGLFGRQVVSGAALQSQAMKVIRRSRWDQKADEAQN
QENQGPVFGPEPKPDGYVESQASPKPQAPSACFGRISTSKKSSINPKMTL
TAVAASPVVPKTNVSDKVVIKKASTKVSAKAPKSAKVVAKVTPAHPPYGR
MVLEALHSIKDRKGSSRQALLKYIMSNYEVGKDQKPVNNHLKKALVAAAK
KGSIKNVGQGKGAAGSFKLSEKAMQMQANAAEQQADQEPAPQPSRKRPQS
GSDAAPAVKRAKKSSAAKTPTKAAVKAKPQVKAAQPSTLVPEVNGAQATP
KKRWGKRQEQAQTKNNNQEKPSQDKPKLQARRKVAQKEAQEVQAQEAPVT
VQETPAPAQKAHAAKPQVPAPVQKAQKKSEDAPEAAQPTRRGQKSANSRQ
SQKSPQSQEESSPQPQRASRPGRSNPKSKQSEDQVQKAKPAPAQKARQAR
QRLQTHVDSAPAIQISQPAEQGEARPQTPNMGAPKGLFGRQVVSGAALQS
QAMKVIRRSRWDQKADEAQNQENQGPVFGPEPKPDGYVESQA back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006334 | nucleosome assembly |
Vocabulary: Molecular Function
| Term | Definition |
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| GO:0003677 | DNA binding |
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