Tk12286, Tk12286 (polypeptide) Tigriopus kingsejongensis

Overview
NameTk12286
Unique NameTk12286
Typepolypeptide
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Sequence length581
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterProScan T. kingsejongensis
Date Performed: 2018-08-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 349..363
score: 35.37
coord: 568..581
score: 37.13
coord: 306..320
score: 32.51
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 323..362
e-value: 4.1E-9
score: 46.3
coord: 541..581
e-value: 6.9E-7
score: 38.9
coord: 454..491
e-value: 120.0
score: 3.8
coord: 497..538
e-value: 0.0022
score: 27.3
coord: 409..448
e-value: 4.0E-5
score: 33.0
coord: 279..319
e-value: 4.2E-8
score: 42.9
coord: 365..406
e-value: 0.056
score: 22.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 282..318
e-value: 1.2E-4
score: 22.6
coord: 502..538
e-value: 0.0011
score: 19.6
coord: 547..581
e-value: 0.045
score: 14.5
coord: 413..447
e-value: 0.22
score: 12.4
coord: 325..362
e-value: 1.0E-6
score: 29.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 286..328
score: 12.28
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 517..547
score: 10.107
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 330..371
score: 14.184
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 548..581
score: 11.678
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 416..448
score: 11.778
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 264..581
e-value: 9.7E-93
score: 312.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..189
NoneNo IPR availableCDDcd00200WD40coord: 283..581
e-value: 6.17986E-63
score: 206.802
IPR032847Pre-mRNA-processing factor 17PANTHERPTHR43979FAMILY NOT NAMEDcoord: 1..581
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 306..320
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 286..581
score: 42.685
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 277..581

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Tigriopus kinsejongensis Genome annotation2018-02-12
InterProScan T. kingsejongensis2018-08-30
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
maker-scaffold324_size206069-snap-gene-1.27-mRNA-1maker-scaffold324_size206069-snap-gene-1.27-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Tk12286 ID=Tk12286|Name=Tk12286|organism=Tigriopus kingsejongensis|type=polypeptide|length=581bp
MNSIVNYGSGSSSGEDSGDEDSARSTRAAFRAEEHLHLKPSTSSLAQKME
LAVTNAAPMVQPNESMDPRRHIDPHTKEVKYNPKYEDLYAPTLGPENPHQ
SDGQKAAKNMLTGLIEEAHVSDFQFELQRKTFHSYGYAQDPSVGVEGEGA
KMIGNLEKGEEDTFKTVFEDTESRPKDKRKRLQNGDAGDIEGFLGPWGAF
EDEQKVAAPDEEDKAFLEEYLAKMKKRAKKQTDDKPIEEKTTLHIKDPYD
YQGRSFLHIPQDVGVNLKSDTPPEKCFIPKRQIHTWAGHTKGVSSMQWFP
RSGHLLLSSGMDSKIKLWEVYNNRRCVRTYTGHKMAVKGIDFNRTGSKFL
STSYDRHIKLWDAETGDCIGRFTNGKVGHCVKFNPDEDKQELFVVGTADK
KILCWDIRSNEIVQEYDRHLGAVNTITFVDENRRFVTTSDDKSMRVWEWD
IPVDMKYIADPTMHSMPAVSKSPNEKWLACQSLDNKICIFTCGEKFRPYK
KKEFKGHMVAGYACQTSFSPEMSYLASGDGDGKVCIWDWKTTRMVAKWKA
HDRTCISVLWHPHETSKLASAGWDGSIKYWD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR032847PRPF17
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0071013catalytic step 2 spliceosome
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
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