Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
uncharacterized oxidoreductase dhs-27-likemaker-scaffold332_size203095-snap-gene-1.25gene
uncharacterized oxidoreductase dhs-27-likemaker-scaffold167_size293163-snap-gene-0.9gene
uncharacterized oxidoreductase -likemaker-scaffold308_size214241-snap-gene-1.34gene
uncharacterized oxidoreductase -likesnap_masked-scaffold591_size129331-processed-gene-0.14gene
uncharacterized oxidoreductase -likemaker-scaffold18_size714446-snap-gene-3.31gene
uncharacterized proteinmaker-scaffold1121_size61474-snap-gene-0.15gene
Uncharacterized protein C16orf68maker-scaffold12_size759060-snap-gene-5.19gene
Uncharacterized protein C17orf39-like proteinmaker-scaffold508_size152036-snap-gene-0.19gene
Uncharacterized protein C19orf29snap_masked-scaffold452_size166894-processed-gene-0.18gene
Uncharacterized protein C4orf8maker-scaffold575_size133042-snap-gene-0.40gene
Uncharacterized protein C4orf8maker-scaffold201_size263271-snap-gene-1.33gene
uncharacterized protein conserved in bacteriamaker-scaffold534_size144770-snap-gene-0.35gene
uncharacterized protein FFUJ_07773maker-scaffold155_size301336-snap-gene-0.13gene
Uncharacterized protein KIAA0195maker-scaffold506_size152672-snap-gene-0.29gene
Uncharacterized protein KIAA0226maker-scaffold193_size270907-snap-gene-1.18gene
uncharacterized protein LOC100162417snap_masked-scaffold645_size120276-processed-gene-0.2gene
uncharacterized protein LOC100168749 precursormaker-scaffold555_size137745-snap-gene-0.18gene
uncharacterized protein LOC100500247maker-scaffold38_size502422-snap-gene-3.22gene
uncharacterized protein LOC101741444maker-scaffold469_size162558-snap-gene-0.28gene
uncharacterized protein LOC101925394maker-scaffold853_size88743-snap-gene-0.14gene
uncharacterized protein LOC641564 precursormaker-scaffold184_size276635-snap-gene-1.34gene
uncharacterized protein LOC664743maker-scaffold262_size232883-snap-gene-0.12gene
uncharacterized protein LOC767623maker-scaffold817_size93049-snap-gene-0.10gene
Uncharacterized protein TCM_039720maker-scaffold456_size166325-snap-gene-0.20gene
uncharacterized serine-rich isoform x2maker-scaffold72_size415059-snap-gene-3.17gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
Downloads