Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
vacuolar protein sorting-associated protein 4amaker-scaffold321_size207582-snap-gene-1.35gene
vacuolar protein sorting-associated protein 4amaker-scaffold789_size96855-snap-gene-0.24gene
vacuolar protein sorting-associated protein 51 homologsnap_masked-scaffold19_size710362-processed-gene-0.6gene
vacuolar protein sorting-associated protein vta1-like proteinsnap_masked-scaffold631_size122145-processed-gene-0.18gene
vacuolar protein-sorting protein bro1maker-scaffold84_size396325-snap-gene-1.18gene
vacuolar proton pump subunit cmaker-scaffold719_size106944-snap-gene-0.26gene
vacuolar proton pump subunit dmaker-scaffold1031_size68893-snap-gene-0.19gene
vacuolar proton translocating atpase 116 kda subunit amaker-scaffold1207_size55689-snap-gene-0.16gene
vacuolar proton translocating atpase 116 kda subunit asnap_masked-scaffold93_size381549-processed-gene-2.18gene
vacuolar-sorting protein snf8maker-scaffold38_size502422-snap-gene-1.14gene
valacyclovir hydrolase snap_masked-scaffold132_size323655-processed-gene-2.1gene
valine--trna ligasemaker-scaffold1131_size60403-snap-gene-0.3gene
valyl-trna synthetasemaker-scaffold360_size197209-snap-gene-0.42gene
valyl-trna synthetasesnap_masked-scaffold10443_size2196-processed-gene-0.0gene
valyl-trna synthetasemaker-scaffold422_size175911-snap-gene-0.38gene
vam6 vps39-likesnap_masked-scaffold57_size444674-processed-gene-3.26gene
vang-like protein 1maker-scaffold497_size155254-snap-gene-0.11gene
van-goghmaker-scaffold1517_size37798-snap-gene-0.9gene
vasa intronic genemaker-scaffold1628_size33005-snap-gene-0.7gene
vasa partialsnap_masked-scaffold628_size122696-processed-gene-0.25gene
vascular cell adhesion protein 1maker-scaffold18_size714446-snap-gene-1.17gene
vascular endothelial growth factor a-amaker-scaffold176_size284796-snap-gene-1.24gene
vascular endothelial growth factor receptor 2maker-scaffold890_size84715-snap-gene-0.10gene
vascular endothelial growth factor receptor 3maker-scaffold890_size84715-snap-gene-0.9gene
vasopressin v1amaker-scaffold123_size333416-snap-gene-0.10gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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