Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
v-type proton atpase subunit emaker-scaffold1246_size53250-snap-gene-0.12gene
v-type proton atpase subunit e 2maker-scaffold916_size81488-snap-gene-0.8gene
v-type proton atpase subunit f 1maker-scaffold1489_size38734-snap-gene-0.10gene
v-type proton atpase subunit h isoform x2maker-scaffold78_size404448-snap-gene-1.9gene
v-type proton atpase subunit s1maker-scaffold9_size846264-snap-gene-4.21gene
wash complex subunit ccdc53 isoform x1maker-scaffold171_size289870-snap-gene-0.8gene
wash complex subunit fam21c-likemaker-scaffold352_size199037-snap-gene-0.31gene
wasp-interacting protein vrp1pmaker-scaffold60_size442463-snap-gene-0.24gene
water partialmaker-scaffold640_size121076-snap-gene-0.20gene
wd40 repeat-containing protein smu1-likemaker-scaffold444_size168727-snap-gene-0.43gene
wd repeat and fyve domain-containing protein 2maker-scaffold484_size159454-snap-gene-0.23gene
wd repeat and hmg-box dna-binding protein 1maker-scaffold1959_size23944-snap-gene-0.6gene
wd repeat and hmg-box dna-binding protein 1maker-scaffold299_size217019-snap-gene-1.35gene
wd repeat and sof domain-containing protein 1snap_masked-scaffold25_size650667-processed-gene-1.1gene
wd repeat-containing and planar cell polarity effector protein fritz isoform x3maker-scaffold159_size295958-snap-gene-1.26gene
wd repeat-containing and planar cell polarity effector protein fritz-likemaker-scaffold159_size295958-snap-gene-1.25gene
wd repeat-containing proteinmaker-scaffold69_size418775-snap-gene-3.28gene
wd repeat-containing protein 20 isoform x9maker-scaffold69_size418775-snap-gene-2.26gene
wd repeat-containing protein 26maker-scaffold329_size204955-snap-gene-1.26gene
wd repeat-containing protein 26maker-scaffold1589_size34815-snap-gene-0.8gene
wd repeat-containing protein 36maker-scaffold119_size336447-snap-gene-2.31gene
wd repeat-containing protein 37-likesnap_masked-scaffold252_size238019-processed-gene-1.14gene
wd repeat-containing protein 44-likemaker-scaffold592_size129239-snap-gene-0.21gene
wd repeat-containing protein 46maker-scaffold23_size669530-snap-gene-3.9gene
wd repeat-containing protein 47snap_masked-scaffold638_size121162-processed-gene-0.4gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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