Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
WIP4maker-scaffold441_size170131-snap-gene-0.26gene
wiskott-aldrich syndrome proteinmaker-scaffold268_size230776-snap-gene-1.39gene
wiskott-aldrich syndrome proteinmaker-scaffold237_size242172-snap-gene-0.21gene
wsc domain-containing protein 1maker-scaffold2020_size22516-snap-gene-0.5gene
wsc domain-containing protein 1maker-scaffold669_size115232-snap-gene-0.22gene
wsc domain-containing protein 2maker-scaffold146_size311726-snap-gene-0.14gene
ww domain-binding protein 11maker-scaffold22_size673200-snap-gene-3.25gene
ww domain-binding protein 2maker-scaffold75_size407189-snap-gene-1.17gene
ww domain-binding protein 4maker-scaffold532_size145644-snap-gene-0.32gene
xaa-pro aminopeptidasemaker-scaffold84_size396325-snap-gene-0.20gene
Xaa-Pro aminopeptidase maker-scaffold129_size324999-snap-gene-1.21gene
xaa-pro dipeptidasemaker-scaffold845_size89356-snap-gene-0.20gene
xanthine dehydrogenasesnap_masked-scaffold264_size232020-processed-gene-0.4gene
xanthine dehydrogenasesnap_masked-scaffold837_size90405-processed-gene-0.20gene
xanthine dehydrogenasesnap_masked-scaffold1796_size27655-processed-gene-0.1gene
xanthine dehydrogenase 1-like isoform x2maker-scaffold985_size73399-snap-gene-0.14gene
xanthine dehydrogenase oxidase-likesnap_masked-scaffold645_size120276-processed-gene-0.3gene
xanthine permeasemaker-scaffold2271_size17764-snap-gene-0.2gene
xanthine uracil vitamin c permeasemaker-scaffold670_size114954-snap-gene-0.20gene
xenobiotic abc transporter atp-binding proteinmaker-scaffold1111_size61970-snap-gene-0.1gene
xenobiotic-transporting atpasemaker-scaffold2707_size13052-snap-gene-0.0gene
xenotropic and polytropic retrovirus receptor 1-like proteinmaker-scaffold1163_size58259-snap-gene-0.7gene
x globinmaker-scaffold18_size714446-snap-gene-4.16gene
xk-related proteinmaker-scaffold580_size130538-snap-gene-0.24gene
xk-related protein 6maker-scaffold284_size223161-snap-gene-1.25gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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